Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq276 143 4e-29 seq46 98.7 1e-15 seq53 91.5 2e-13 >seq276 Length=693516 Score = 143 bits (158), Expect = 4e-29 Identities = 236/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | ||| || || |||| ||| ||||||||||||||| ||||| ||||| || Sbjct 676921 ATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCGC 676980 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 ||||| | ||||| ||||| | |||| | ||| || ||||| || || || || Sbjct 676981 GATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTC 677040 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | ||| || ||||||||| || || || ||||| || || || |||| | || Sbjct 677041 GACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGAT 677100 Query 42505 AAAATATTTTTCGTCCGGTGTT-AATTTATTCCAATCATTGATATCTTTAGATATATCTA 42563 || | ||| ||| || | ||| ||||| | | ||| || || | ||| | Sbjct 677101 GAAGTGACGCTCG-CCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGAGAGATCAA 677159 Query 42564 CTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGAT 42623 | ||||| || |||||||| ||||| |||| || ||||| | | ||| | ||| || | Sbjct 677160 CCTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGT 677219 Query 42624 ATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 |||| || ||||| | |||||||| || || |||||| Sbjct 677220 ATTGGATGGGGAATAGAACAAATCGATGCGGGTTTGGT 677257 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||||||||| ||||||||||| || | ||| || || || | Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| | ||| || ||||| ||||||||||| | || || ||||| ||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAA 42209 || || || ||||| |||||||||| Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAA 676765 >seq46 Length=2247445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 72315 CATT-TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 72373 |||| || ||||| | || ||| ||| | || ||||| || || || ||||| || | Sbjct 184812 CATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCTTCGATACTGTCGT 184871 Query 72374 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 72433 | |||| | | || |||||||| |||||||| | | | |||| || |||||| | Sbjct 184872 CTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTACCACTATTAAACA 184931 Query 72434 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 72487 ||| || ||||| || |||||||| || || |||| |||||||||||||| || Sbjct 184932 GGGTCGGTGAAGCATGGGTAAACCACTTCTCCGACATTAGATTGTACGTCTGAA 184985 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 ||| || |||||||| | ||| ||| | || |||||| ||| | | |||||| Sbjct 183280 TAAACCTGGACATTCGTGTGGATCCATGAGTGTCCACTCCTCATTGGCCTCCACTCGTCG 183339 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||| |||| ||| || ||||| || || ||| || | ||| | | | || ||| Sbjct 183340 CATGAAGATATCCGGTATCCAGAGGGC-ATAGAACAAATCCCGACCACGAATTTCTTCGG 183398 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 || ||||| ||| | || | |||| | | || | |||||||||||||| || Sbjct 183399 CGCCAGTATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCACGGTTCCAGGT 183458 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | | ||| | | | || || ||||| ||||| ||||| || ||||| | ||| ||||||| Sbjct 183459 AGACGGCGAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGAGCAGTGTTAT 183518 Query 72209 TATAAACTCTCAACATTGGAA 72229 || | || | ||||||||||| Sbjct 183519 TAAACACACGCAACATTGGAA 183539 >seq53 Length=2095963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 165598 GAGTA--TACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGA 165655 ||||| |||||||| |||||| || ||||| ||||| || |||||||||||| ||| Sbjct 32561 GAGTACTTACGAACCTGGAAAGCGACACTGGTTGAAAATCAAACGAGACTATTTGGCCGA 32620 Query 165656 GGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTATGGTAAAGG-AG 165714 ||| || ||||| ||||| | |||||| | ||| | || || |||||||| | || | Sbjct 32621 GGGATCGATGGCCGATTCGGTCGATTTGATCGTATTGGGAGCGTACTATGGGACCGGTAA 32680 Query 165715 CAAAGG 165720 |||||| Sbjct 32681 CAAAGG 32686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670785039844160