Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq168 120 2e-22 seq190 86.0 5e-12 >seq168 Length=1129759 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| ||||| || ||||||||||| ||| ||| | ||||| | ||| Sbjct 774142 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774201 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | ||||| ||||| |||||| ||| || ||||| ||||| || || Sbjct 774202 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774261 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || |||||||| ||| || || | |||||| || ||||| || Sbjct 774262 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 774321 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || ||||| Sbjct 774322 CAGGGTCTTCACGAATATCTGCAT 774345 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| ||||| || ||||||||||| ||| ||| | ||||| | ||| Sbjct 774370 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774429 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | ||||| ||||| |||||| ||| || ||||| ||||| || || Sbjct 774430 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774489 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || |||||||| ||| || || | |||||| || ||||| || Sbjct 774490 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 774549 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || ||||| Sbjct 774550 CAGGGTCTTCACGAATATCTGCAT 774573 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| ||||| || ||||||||||| ||| ||| | ||||| | ||| Sbjct 774598 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774657 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | ||||| ||||| |||||| ||| || ||||| ||||| || || Sbjct 774658 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774717 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || |||||||| ||| || || | |||||| || ||||| || Sbjct 774718 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 774777 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || ||||| Sbjct 774778 CAGGGTCTTCACGAATATCTGCAT 774801 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| ||||| || ||||||||||| ||| ||| | ||||| | ||| Sbjct 774826 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774885 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | ||||| ||||| |||||| ||| || ||||| ||||| || || Sbjct 774886 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774945 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || |||||||| ||| || || | |||||| || ||||| || Sbjct 774946 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 775005 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || || ||||| Sbjct 775006 CAGGGTCTTCACGAATATCTGCAT 775029 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| ||||| || ||||||||||| ||| ||| | ||||| | ||| Sbjct 775054 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 775113 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | ||||| ||||| |||||| ||| || ||||| ||||| || || Sbjct 775114 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 775173 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || || |||||||| ||| || || | ||| || || || || || Sbjct 775174 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTCCCAGT 775233 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || || ||||| Sbjct 775234 AAGAGTCTTCACGAAGATCTGCAT 775257 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| || || || ||||| || || || ||||||||||| || | | | ||| Sbjct 773906 AAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATCT 773965 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||||||| || | ||||| ||||| |||||| ||| || ||||| ||||| Sbjct 773966 TCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774025 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || || ||| ||| | || || |||||||| ||| || || | ||| || || Sbjct 774026 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTC 774085 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || || || ||||| Sbjct 774086 TTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 >seq190 Length=1055212 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| || | || | || | ||| |||||||| ||||| || ||||||||||| Sbjct 796632 TGCCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAG 796573 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | |||| || | || || || ||| | ||||| || ||||| || | Sbjct 796572 AAAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAG 796513 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| ||| ||| || ||| |||| |||||||| ||| | Sbjct 796512 GGATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAA 796453 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | |||||||| || || || || || || || || || ||||| || Sbjct 796452 CCTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361992856085256