Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq168 113 3e-20 >seq168 Length=1129759 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| ||||| || |||||||| || || ||||| |||||||| | | | Sbjct 735629 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 735688 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| || || || | ||||||||||| | || |||||||| || Sbjct 735689 TCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735748 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || |||| | || || | | ||| |||||| | | | ||| || || || ||| Sbjct 735749 TCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATC 735808 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || ||||| || || |||||||| Sbjct 735809 GTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || ||||| || || || |||||||| || || | || Sbjct 773903 CGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCA 773962 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || || | ||| || || ||| || || ||||||||||| | || |||||||| || Sbjct 773963 TCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTG 774022 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | ||||| || || | | ||| || ||| | | || ||| || || || Sbjct 774023 TCTTGGATCTTCGCC---TTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTG 774079 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || |||||||| || ||||| || |||||| Sbjct 774080 ATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/217 (70%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----T 33215 ||||| ||| | || || ||||| || || ||||||||||||| ||||| | | Sbjct 775048 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACA----GAGTTCGACCAT 775103 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-- 33273 | || | ||| || || ||| || || ||||||||||| | || |||||||| || Sbjct 775104 CTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGT 775163 Query 33274 -TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 || | | ||||| || || | | ||| || ||| | | || ||| || || || | Sbjct 775164 CTTGGATCTTCGCC---TTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGA 775220 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || |||||||| || ||||| || ||||| Sbjct 775221 TCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----T 33215 ||||| ||| | || || ||||| || || ||||||||||||| ||||| | | Sbjct 774136 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACA----GAGTTCGACCAT 774191 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-- 33273 | || | ||| || || ||| || || ||||||||||| | || |||||||| || Sbjct 774192 CTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGT 774251 Query 33274 -TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 || | | ||||| || || | | ||| || ||| | | || ||| || || || | Sbjct 774252 CTTGGATCTTCGCC---TTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAA 774308 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| || || || || || || ||||| || |||||| Sbjct 774309 TCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774346 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----T 33215 ||||| ||| | || || ||||| || || ||||||||||||| ||||| | | Sbjct 774364 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACA----GAGTTCGACCAT 774419 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-- 33273 | || | ||| || || ||| || || ||||||||||| | || |||||||| || Sbjct 774420 CTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGT 774479 Query 33274 -TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 || | | ||||| || || | | ||| || ||| | | || ||| || || || | Sbjct 774480 CTTGGATCTTCGCC---TTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAA 774536 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| || || || || || || ||||| || |||||| Sbjct 774537 TCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774574 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----T 33215 ||||| ||| | || || ||||| || || ||||||||||||| ||||| | | Sbjct 774592 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACA----GAGTTCGACCAT 774647 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-- 33273 | || | ||| || || ||| || || ||||||||||| | || |||||||| || Sbjct 774648 CTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGT 774707 Query 33274 -TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 || | | ||||| || || | | ||| || ||| | | || ||| || || || | Sbjct 774708 CTTGGATCTTCGCC---TTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAA 774764 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| || || || || || || ||||| || |||||| Sbjct 774765 TCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774802 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----T 33215 ||||| ||| | || || ||||| || || ||||||||||||| ||||| | | Sbjct 774820 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACA----GAGTTCGACCAT 774875 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-- 33273 | || | ||| || || ||| || || ||||||||||| | || |||||||| || Sbjct 774876 CTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGT 774935 Query 33274 -TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 || | | ||||| || || | | ||| || ||| | | || ||| || || || | Sbjct 774936 CTTGGATCTTCGCC---TTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAA 774992 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| || || || || || || ||||| || |||||| Sbjct 774993 TCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 775030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318613586533968