Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq168 91.5 1e-13 >seq168 Length=1129759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || ||||| ||||| ||| ||| || ||||| || ||||| ||| ||| |||| Sbjct 773906 AAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATCT 773965 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | |||||| || ||||| ||||| ||||||||||| | || | ||||| || ||| Sbjct 773966 TCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774025 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGC-TCCACATCGACCGTAATTGT 44088 || || || || | ||| |||||| || || || || || | || || || Sbjct 774026 TGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGTGATCGT 774084 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || | ||||||||| ||||| |||||| Sbjct 774085 CTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354595064263968