Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq168 95.1 1e-14 >seq168 Length=1129759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || |||||||| || ||||||||||| || |||| | |||||| Sbjct 774136 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774195 Query 20059 CAATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 | ||||||||| ||| |||| |||| | || || ||| || | |||||| ||||| Sbjct 774196 AAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTCTT 774254 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || || ||||| | ||| || ||||| | ||| ||| | |||||| || | Sbjct 774255 GGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774314 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||||| || || || || || ||||| Sbjct 774315 TACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || |||||||| || ||||||||||| || |||| | |||||| Sbjct 774364 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774423 Query 20059 CAATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 | ||||||||| ||| |||| |||| | || || ||| || | |||||| ||||| Sbjct 774424 AAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTCTT 774482 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || || ||||| | ||| || ||||| | ||| ||| | |||||| || | Sbjct 774483 GGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774542 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||||| || || || || || ||||| Sbjct 774543 TACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || |||||||| || ||||||||||| || |||| | |||||| Sbjct 774592 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774651 Query 20059 CAATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 | ||||||||| ||| |||| |||| | || || ||| || | |||||| ||||| Sbjct 774652 AAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTCTT 774710 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || || ||||| | ||| || ||||| | ||| ||| | |||||| || | Sbjct 774711 GGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774770 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||||| || || || || || ||||| Sbjct 774771 TACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || |||||||| || ||||||||||| || |||| | |||||| Sbjct 774820 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 774879 Query 20059 CAATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 | ||||||||| ||| |||| |||| | || || ||| || | |||||| ||||| Sbjct 774880 AAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTCTT 774938 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || || ||||| | ||| || ||||| | ||| ||| | |||||| || | Sbjct 774939 GGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774998 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||||||| || || || || || ||||| Sbjct 774999 TACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||| ||| || || |||||||| || ||||||||||| || |||| | |||||| Sbjct 775048 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTC 775107 Query 20059 CAATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 | ||||||||| ||| |||| |||| | || || ||| || | |||||| ||||| Sbjct 775108 AAGTTGTTTGCCGGCAAAAATCAAGCGT-TGCTGGTCGGGTGGGATGCCTTCCTTGTCTT 775166 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || || ||||| | ||| || ||||| | ||| ||| | ||| || || | Sbjct 775167 GGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCT 775226 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || || | || || || || || |||||| Sbjct 775227 TCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419371319238696