Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq190 163 7e-35 seq168 154 3e-32 seq276 107 4e-18 >seq190 Length=1055212 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || |||||||||||||| || || ||| Sbjct 796633 ATGCCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCA 796574 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| || || || ||||| || ||||| | | ||||||||| ||| Sbjct 796573 GAAAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGA 796514 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || |||||||| ||||| |||||||| | |||||| | ||| Sbjct 796513 GGGATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCA 796454 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| |||||||| ||||| || || ||||| || || || |||||||| || Sbjct 796453 ACCTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 >seq168 Length=1129759 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||||||||| || || || ||||| ||||||| ||| || Sbjct 774133 AAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATC 774192 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || |||||||| | | || || || || || || ||||| || || Sbjct 774193 TTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774252 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | |||||||| | ||| || || || ||||| || Sbjct 774253 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGT 774312 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || ||||||||||| Sbjct 774313 CTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||||||||| || || || ||||| ||||||| ||| || Sbjct 774361 AAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATC 774420 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || |||||||| | | || || || || || || ||||| || || Sbjct 774421 TTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774480 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | |||||||| | ||| || || || ||||| || Sbjct 774481 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGT 774540 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || ||||||||||| Sbjct 774541 CTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||||||||| || || || ||||| ||||||| ||| || Sbjct 774589 AAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATC 774648 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || |||||||| | | || || || || || || ||||| || || Sbjct 774649 TTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774708 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | |||||||| | ||| || || || ||||| || Sbjct 774709 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGT 774768 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || ||||||||||| Sbjct 774769 CTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||||||||| || || || ||||| ||||||| ||| || Sbjct 774817 AAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATC 774876 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || |||||||| | | || || || || || || ||||| || || Sbjct 774877 TTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774936 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | |||||||| | ||| || || || ||||| || Sbjct 774937 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGT 774996 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || ||||||||||| Sbjct 774997 CTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 152 bits (168), Expect = 1e-31 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||||||||| || || || ||||| ||||||| ||| || Sbjct 775045 AAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATC 775104 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || |||||||| | | || || || || || || ||||| || || Sbjct 775105 TTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 775164 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || ||||| || | |||||||| | ||| || || || || || || Sbjct 775165 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGT 775224 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| |||||||| || || || || ||||||||| Sbjct 775225 CTTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| || || || |||||||| || || || |||| || | || ||||| |||||| Sbjct 773915 TGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATCTTCGAGTTGT 773974 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| | | || || || || || || ||||| || || || ||||| Sbjct 773975 TTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTC 774034 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || ||||| || | |||||||| | ||| || || || || || ||||| |||||| Sbjct 774035 GCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTCCCAGTA 774094 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||||||||| Sbjct 774095 AGAGTCTTCACGAATATCTGCAT 774117 >seq276 Length=693516 Score = 107 bits (118), Expect = 4e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194 |||||||| ||||| || || || || || ||||| || || || ||||| || ||| Sbjct 676769 TTAGTTGCCTTTGCTGCAGTCGAGGGCATTTTCTTCTCTGGCAGCTTCGCCGCAATATTT 676710 Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254 ||| |||| ||| | ||| | ||||| || ||||| ||| ||| ||| |||| || || Sbjct 676709 TGGCTGAAAAAACGCGGCTTGATGCCTGGGTTAACCTTCAGTAATGAACTGATCAGTAGA 676650 Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTGTTTATTAT 269291 || |||||| | |||||||||||||| || | |||| Sbjct 676649 GATGAAGGTCTGCACTGCGACTTCGCCTGCATGTTAT 676613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150775617240928