Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq233 91.5 8e-14 seq101 84.2 1e-11 seq173 82.4 4e-11 >seq233 Length=855571 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/87 (84%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCC--ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| || ||||||| ||| |||||||||| |||| |||||||||||||||||| Sbjct 743763 AAAAAGTAAGTTGGCCCGGATGG--GGATCGAACCCACGACATTCGCGTTATTAGCACGA 743820 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||| ||||| Sbjct 743821 CGCTCTAACCAACTGAGCTACCGGGCC 743847 >seq101 Length=1509306 Score = 84.2 bits (92), Expect = 1e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTA 11522 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct 816795 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTA 816741 >seq173 Length=1101643 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||| Sbjct 359631 GGATCGAACCCACGACATTCGCGTTATTAGCGCGACGCTCTAACCAACTGAGCTACCGGG 359690 Query 11528 CC 11529 || Sbjct 359691 CC 359692 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261356660816416