Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq168 100 3e-16 seq190 89.7 5e-13 >seq168 Length=1129759 Score = 100 bits (110), Expect = 3e-16 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| |||||||| | ||| || ||||| || | ||| ||||| ||| || | Sbjct 773903 CGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCG--ATAAGGTACGTC 773960 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || || ||||| ||| |||| || || | |||||| || || || || ||||| | Sbjct 773961 CATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCT 774020 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTG 94969 |||| | || || ||||| || | | ||| || || || | | || |||| ||| Sbjct 774021 TGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGTG 774079 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || ||||||||||| ||||| || |||||||||| Sbjct 774080 ATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCATGC 774119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | ||| ||||| || || | ||| ||||| || ||| | || ||| Sbjct 775048 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGT--TCGACCATCT 775105 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || ||||| ||| |||| || || | |||||| || || || || ||||| ||||| Sbjct 775106 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 775165 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGACGTCAATCGTGATGGT 94974 | || || ||||| || | | ||| || || || | | || |||| ||||| || Sbjct 775166 TGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGTGATCGT 775224 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||||||||| ||||| ||||||||||| Sbjct 775225 CTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||||||||||||||| || || || | ||| || || || ||| || Sbjct 735629 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAA--TGTACGAC 735686 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||| || || ||| | || || | | |||||| || || || || ||||| | Sbjct 735687 CGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCT 735746 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTG 94969 | || | ||| || ||||| ||| | | ||||| || | || || || | ||| Sbjct 735747 TATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTC-GCTAGCCTCAACCTCGAGGGTG 735805 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || |||||||||||||| ||||| Sbjct 735806 ATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | |||||| || || || | ||| || || || || | ||||| Sbjct 735862 CACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTC 735921 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| ||| | || || | | |||||| || || || || ||||| || || | Sbjct 735922 CAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTG 735981 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||| ||| | | |||||| | ||||| |||| ||||| || || Sbjct 735982 AATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCTT 736041 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 736042 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 >seq190 Length=1055212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || || | ||||| |||| |||| || ||||| || || | ||| ||||| Sbjct 796630 CCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAA 796571 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||||||| ||||| | || || |||| || ||||||||||| Sbjct 796570 AGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGG 796511 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| || || ||||| ||| || || | || || Sbjct 796510 ATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACC 796451 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| ||||| || || || || || ||||||||||| Sbjct 796450 TCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448054636733760