Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq115 168 1e-37 seq111 154 2e-33 seq456 145 1e-30 seq293 123 4e-24 seq195 95.1 2e-15 seq227 86.0 1e-12 seq306 80.6 4e-11 >seq115 Length=1458733 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || ||||| ||||| |||||||| || |||||||| || |||||| | |||||| Sbjct 416539 CTGCGTGACAACATACAAGGTATCACCAAACCTGCTATCCGACGACTGGCTAGACGTGGT 416598 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| ||||||| || | ||||| |||| || | ||||| || | || Sbjct 416599 GGAGTTAAGCGTATCTCTGGGCTGATTTATGAGGAGACGCGGGGCGTTTTAAAAGTGTTT 416658 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | ||||| | |||||| | |||||| |||||||| ||||| ||||||||| Sbjct 416659 TTGGAAAATGTTATACGTGATGCCGTGACCTATACGGAGCACGCGAAACGCAAGACTGTC 416718 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | |||||||| | ||||| || || |||| |||||||||| || Sbjct 416719 ACTGCTATGGATGTTGTCTATGCTCTCAAACGCCAGGGTCGTACTCTTTATGGTTTCGGT 416778 Query 16694 AGTTAA 16699 ||||| Sbjct 416779 GGTTAA 416784 >seq111 Length=1475026 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| ||| || ||||||||||| || |||||||| || || ||| Sbjct 142063 GCGAAACGCCATCGCAAGGTTCTCCGCGATAACATCCAGGGGATCACCAAACCCGCAATC 142004 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| || ||||| || || || |||| || || |||| || |||| | Sbjct 142003 CGCCGTCTCGCTCGCCGAGGTGGTGTGAAACGCATCTCCGGTCTGATCTACGAGGAGACT 141944 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 141943 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGAG 141884 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| ||||| | ||||| | || || || |||||||| |||||| Sbjct 141883 CATGCCAAGCGAAAGACCGTCACTGCTATGGACGTTGTGTACGCCTTGAAACGCCAAGGC 141824 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || || || |||||| Sbjct 141823 CGCACTCTCTACGGCTTCGGTGGTTAAT 141796 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| ||| || ||||||||||| || |||||||| || || ||| Sbjct 152190 GCGAAACGCCATCGCAAGGTTCTCCGCGATAACATCCAGGGGATCACCAAACCCGCAATC 152131 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| || ||||| || || || |||| || || |||| || |||| | Sbjct 152130 CGCCGTCTCGCTCGCCGAGGTGGTGTGAAACGCATCTCCGGTCTGATCTACGAGGAGACT 152071 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| ||| |||| ||| || || ||| |||||| Sbjct 152070 CGCGGTGTCCTCAAGGTGTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGAG 152011 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| ||||| | ||||| | || || || |||||||| |||||| Sbjct 152010 CATGCCAAGCGAAAGACCGTCACTGCTATGGACGTTGTGTACGCCTTGAAACGCCAAGGC 151951 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || || || |||||| Sbjct 151950 CGCACTCTCTACGGCTTCGGTGGTTAAT 151923 >seq456 Length=349043 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||||| ||| || ||||||||| | | ||||||||||| || ||| Sbjct 113771 GCTAAACGTCATCGCAAGGTTCTCCGCGATAACATCTAGGAGATCACCAAGCCGGCCATC 113712 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| || ||||| || ||||| | |||| | |||| || |||| Sbjct 113711 CGCCGTCTCGCTCGCCGAGGTGGTGTGAAGCGCACCACTGGTCCGATCTACGAGGAGACC 113652 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| || |||||||| ||| | || ||| |||||| Sbjct 113651 CGCGGTGTCCTCAAGGTGTTCCTTGAGGACGTTATCCGTGACGTCGTCACCTACACCGAG 113592 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||| ||||||| || | | ||||||||| | ||||| Sbjct 113591 CACGCCAAGCGAAAGACCGTCAATGCCATGGACATTGCAAACGCATTGAAATGCCAAGGT 113532 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || || ||||| |||||| Sbjct 113531 CGCACTCTCTACGGCTTTGGTGGTTAAT 113504 >seq293 Length=655190 Score = 123 bits (136), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 16442 CATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTG 16501 ||||||| ||| | ||||||||||| || ||||||||||| || ||||||||||| Sbjct 67318 CATCGCAAGGTTCTCCCCGATAACATCCAGGGGATCACCAAGCCGGCCATCCGTCGTCTC 67377 Query 16502 GCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561 || || | ||||| || ||||| || || || |||| || |||| || ||| Sbjct 67378 GCCCGCTGAGGTGGTGTGAAGCG-CAATCCGGTCTGATCTACGAGGAGACCCGCTGTGTC 67436 Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621 | ||| | ||||| ||| ||| |||| ||| || || ||| || |||||||| || Sbjct 67437 CTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCATCACCTACACTGAGCACGCCAAG 67496 Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||| ||||| ||||||| | || || | |||||||| | |||||| Sbjct 67497 CGAAAGACCGTCACTGCCATGGACGTTGTGTACACTTTGAAACGCCGAGGCCG 67549 >seq195 Length=1028131 Score = 95.1 bits (104), Expect = 2e-15 Identities = 181/263 (69%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 16439 CGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCG 16497 || ||||| | ||| ||| || | ||||||||| || ||| ||||||| || ||||| | Sbjct 301205 CGGCATCGTAAGAT-TCTCCGGGTTAACATCCAGGGGATCGCCAAGCCGGCCATCCGCCT 301147 Query 16498 TCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGA 16557 ||| | ||| || ||| | | | || ||| || || |||| || || | || | Sbjct 301146 TCTTGGTCGCCGAGGTCGTCTGAT-CGCACCTCCGGTGTGATCTACGAGGAAAGCCGCGG 301088 Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 || ||||| | ||||| ||| | |||| | | || || ||| ||||||||||| Sbjct 301087 CGTCCTGAAGGTGTTCCTTGAGAAATTCATCCGTCACGCCGTCACCTACACCGAGCACGC 301028 Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAA 16677 || || ||||| || || ||||||| | || || | |||||||| |||||||| | Sbjct 301027 CAAGCGCAAGACCGTTACTACCATGGACGTTGTGTACGTCTTGAAACGCCAAGGCCGCAC 300968 Query 16678 GATTTATGGTTTTGGAAGTTAAT 16700 | || || || || |||||| Sbjct 300967 TCTGTACGGCTTCGGTGGTTAAT 300945 >seq227 Length=882600 Score = 86.0 bits (94), Expect = 1e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || |||||||||| || ||||| ||||| | ||| || |||| Sbjct 759698 CGCGATAACATCCAGGGGGTCACCAAGCCGGCCATCCGCCGTCTCGTTCGACGAAGTGGT 759639 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | |||| || |||| || | ||| | ||| | ||| Sbjct 759638 GTGAAGCGCATCTCCGGTCTACTCTACGAGGAGACCCGCGGTGTCCTCAAGGTGCTCCCT 759579 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 ||| ||| |||| || || || ||| ||||||||||| || || || Sbjct 759578 GAGAACGTCATCCGTGGCGCCGTCACCTACACCGAGCACGCCAAGCGAAA 759529 >seq306 Length=629434 Score = 80.6 bits (88), Expect = 4e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| ||| || ||||||||||| || ||||||||||| || ||| Sbjct 380054 GCGAAACGCCATCGCAAGGTTCTCCGGGATAACATCCAGGGGATCACCAAGCCGGCCATC 380113 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCT 16541 || ||||| ||||| || ||||| || |||| |||| || || ||| Sbjct 380114 CGCCGTCTCGCTCGCCGAGGTGGTGTGAAGCACATCTCCGGTCTGATCT 380162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79036601615688