Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq276 113 6e-20 seq46 98.7 1e-15 seq53 91.5 2e-13 >seq276 Length=693516 Score = 113 bits (124), Expect = 6e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||||||||| || |||||||| || ||||| || || || | Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | ||| || ||||| ||||||||||| | ||||| ||||| ||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAA 33448 || || || |||||||||||||||| Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAA 676765 >seq46 Length=2247445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 63509 CATT-TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT 63567 |||| || ||||| | || ||| ||| | |||||||| ||||| || || || || | Sbjct 184812 CATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCTTCGATACTGTCGT 184871 Query 63568 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63627 | |||| | | || |||||||| |||||||| | | | |||| || |||||| | Sbjct 184872 CTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTACCACTATTAAACA 184931 Query 63628 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63681 ||| || ||||| || |||||||| || || || | |||||||||||||| || Sbjct 184932 GGGTCGGTGAAGCATGGGTAAACCACTTCTCCGACATTAGATTGTACGTCTGAA 184985 Score = 96.9 bits (106), Expect = 4e-15 Identities = 179/260 (69%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 63165 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63224 || || |||||||| | ||| ||| | | |||||| | | ||| ||||||| | Sbjct 183281 AAACCTGGACATTCGTGTGGATCCATGAGTGTCCACTCCTCATTGGCCTCCACTCGTCGC 183340 Query 63225 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTT 63283 || |||| ||| || ||||| || || ||| || | ||| | | | ||| ||| Sbjct 183341 ATGAAGATATCCGGTATCCAGAGGGC-ATAGAACAAATCCCGACCACGAATTTCTTCGGC 183399 Query 63284 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63343 || ||||| ||| | || | |||| | | || | |||||||||||||| ||| Sbjct 183400 GCCAGTATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCACGGTTCCAGGTA 183459 Query 63344 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63403 | ||| | | | || || ||||| ||||| ||||| || ||||| | ||| |||||||| Sbjct 183460 GACGGCGAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGAGCAGTGTTATT 183519 Query 63404 ATAAACTCTCAACATTGGAA 63423 | | || | ||||||||||| Sbjct 183520 AAACACACGCAACATTGGAA 183539 >seq53 Length=2095963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 157114 GAGTA--TACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGA 157171 ||||| |||||||| |||||| || ||||| ||||| || |||||||||||| ||| Sbjct 32561 GAGTACTTACGAACCTGGAAAGCGACACTGGTTGAAAATCAAACGAGACTATTTGGCCGA 32620 Query 157172 GGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTATGGTAAAGG-AG 157230 ||| || ||||| ||||| | |||||| | ||| | || || |||||||| | || | Sbjct 32621 GGGATCGATGGCCGATTCGGTCGATTTGATCGTATTGGGAGCGTACTATGGGACCGGTAA 32680 Query 157231 CAAAGG 157236 |||||| Sbjct 32681 CAAAGG 32686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622618470762560