Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq168 100 3e-16 seq190 82.4 7e-11 >seq168 Length=1129759 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | ||||| || |||||||| | ||| | ||| ||| Sbjct 775258 AATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 775199 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| || || ||| | || || ||||| ||||| ||||| || || ||||| || Sbjct 775198 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 775139 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | | |||| | |||||||||||| ||||||| | ||| | || || || Sbjct 775138 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 775079 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || |||||||| ||| | |||||||| || Sbjct 775078 CATCCAGAAAGAATCCACTCTTCATCTGGTGCT 775046 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| ||| | ||| | ||| ||| | Sbjct 774345 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774286 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||| ||||| ||||| || || ||||| || Sbjct 774285 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774226 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | |||||||||||| ||||||| | ||| | || || ||| Sbjct 774225 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774166 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| ||| | |||||||| || Sbjct 774165 ATCCAGAAAGAATCCACTCTTCATCTGGTGCT 774134 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| ||| | ||| | ||| ||| | Sbjct 774573 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774514 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||| ||||| ||||| || || ||||| || Sbjct 774513 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774454 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | |||||||||||| ||||||| | ||| | || || ||| Sbjct 774453 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774394 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| ||| | |||||||| || Sbjct 774393 ATCCAGAAAGAATCCACTCTTCATCTGGTGCT 774362 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| ||| | ||| | ||| ||| | Sbjct 774801 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774742 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||| ||||| ||||| || || ||||| || Sbjct 774741 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774682 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | |||||||||||| ||||||| | ||| | || || ||| Sbjct 774681 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774622 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| ||| | |||||||| || Sbjct 774621 ATCCAGAAAGAATCCACTCTTCATCTGGTGCT 774590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| ||| | ||| | ||| ||| | Sbjct 775029 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774970 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||| ||||| ||||| || || ||||| || Sbjct 774969 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774910 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | |||||||||||| ||||||| | ||| | || || ||| Sbjct 774909 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774850 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || |||||||| ||| | |||||||| || Sbjct 774849 ATCCAGAAAGAATCCACTCTTCATCTGGTGCT 774818 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || |||||||| | ||| | ||| ||| | Sbjct 774117 ATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 774058 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||| ||||| ||||| || || ||||| || Sbjct 774057 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 773998 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | |||||||||||||||||||| | | | | || || ||| Sbjct 773997 CAACGCTTGATTTTTGCCGGCAAACAACTCGAAGATGGACGTACCTTATCGGATTACAAC 773938 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || ||| | || |||| || | ||| | || || Sbjct 773937 ATTCAGAAGGAGTCCACTCTACACTTGGTTTTGCGCCTTCGTGGTGG 773891 >seq190 Length=1055212 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || || ||| | || ||||| | || || | || | ||| | Sbjct 796401 AAGATGCAGATCTTCGTCAAGACACTCACGGGAAAGACCATTACACTTGAGGTTGAAGCG 796460 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || |||||||| | |||||| |||||| ||||| || ||||| ||||| ||| Sbjct 796461 TCGGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGGATCCCTCCAGAT 796520 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| || | |||| || || || || || || || | | | | || || Sbjct 796521 CAACAGCGATTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGTACTCTTTCTGATTAC 796580 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| |||||||| || | |||||||||||| |||| || || || Sbjct 796581 AACATTCAGAAAGAATCCACCCTGCATCTGGTCCTGCGACTCAGGGGTGG 796630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478409809851520