Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq46 100 7e-16 seq276 93.3 1e-13 >seq46 Length=2247445 Score = 100 bits (110), Expect = 7e-16 Identities = 260/392 (66%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 ||||| ||||| || || || || ||||| ||||| ||||||||||||| | |||||| Sbjct 180587 GCGCCAATGCCAACTGCATCGACAGCACAAATCCTGGGAAACAACGAGTCTATTGAACCG 180528 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 || || ||||| | || || ||||| || || || ||||| | | || ||| Sbjct 180527 TTCACTAGCAACGTCTACTCTCGCCGCGTGCTCAGTGGTGAATTCCAAATCGTCAATCCC 180468 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCA-TGAAGAACTATAT 364928 || || | | || || | | || | ||| || || | | ||| | || Sbjct 180467 TATCTGATGGATGACCTCAACAAATTGGGATTATGGTCCGA-AGAACTCAAGTCCGCCAT 180409 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 | || | |||||||| ||| | |||| ||| |||| || || | ||| || | Sbjct 180408 TGTGGCAAACCAAGGTTCTGTTCAGGATATTCAAGGCATTCCTGATGAAATAAAGGCTCT 180349 Query 364989 TTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGG 365048 ||||||||| | |||||| |||| ||| | | ||||| ||||||||||| || || Sbjct 180348 CTACAAAACCATCTGGGAACTTTCTCAGCGCAAGATAATTGACATGGCGGCCGACCGAGG 180289 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG--ACTCAGCCAACCTCCGCC 365106 |||||||| || || || || | ||| || |||| ||||||| | || || Sbjct 180288 GCCTTTTATCGACCAAAGTCAATCACTCAACTTA--CATGTTGCTCAGCCCAACTACGGG 180231 Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 || |||| |||||| || |||| |||||| Sbjct 180230 AAAATTACCAGCATGCACTTTTACGCGTGGAA 180199 Score = 93.3 bits (102), Expect = 1e-13 Identities = 189/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||||| ||| | ||||||||| | || ||||| | ||| |||||||||||||| || Sbjct 183540 GTTCCAATGTTGCGTGTGTTTAATAACACTGCTCGCTACATCGACCAGGGTGGAAATAAA 183481 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 ||| || || || || | || || || || ||| | || | | |||| || Sbjct 183480 CGCCCCGGTGCTTTCGCCGTCTACCTGGAACCGTGGCATCCGGACGTCCTCCAGTTCATT 183421 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | || ||||| || || || ||| | |||| || ||| |||||||||| || Sbjct 183420 GAAATGCGAAAAAATACTGGCGCCGAAGAAATTCGTGGTCGGGATTTGTTCTATGCCCTC 183361 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGC 364011 ||| | | || || ||| || |||||||| | || | ||| ||||| | Sbjct 183360 TGGATACCGGATATCTTCATGCGACGAGTGGAGGCCAATGAGGAGTGGACACTCATGGAT 183301 Query 364012 CCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGA 364052 |||||||||||||||||| | | ||| |||||||| || Sbjct 183300 CCACACGAATGTCCAGGTTTACCTGATAAGTGGGGTGAGGA 183260 >seq276 Length=693516 Score = 93.3 bits (102), Expect = 1e-13 Identities = 239/361 (66%), Gaps = 5/361 (1%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATT 22541 || ||||| ||| | |||| ||||||| || || ||||||||||| ||||| ||| || Sbjct 676781 TTTGCGGAGCGTTTAGTTGCCTTTGCTGCAGTCGAGGGCATTTTCTTCTCTGGCAGC-TT 676723 Query 22542 TTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGA 22601 ||||| |||||||| |||||||| | | ||||| || |||| || ||||| Sbjct 676722 CGCCGCAATATTTTGGCTGAAAAAACGCGGCTTGATGCCTGGGTTAACCTTCAGTAATGA 676663 Query 22602 GTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCA 22661 | || || ||||||| ||||| || ||| || || || ||| |||| || | Sbjct 676662 ACTGATCAGTAGAGATGAAGGTCTGCACTGCGACTTCGCCTGCATGTTATA---CAAATA 676606 Query 22662 TATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACT 22721 || |||| || | | || | || ||| |||| || |||| | ||||| ||| | Sbjct 676605 CATTGTTCAAAAGCCTGCAAAGGATCGTGTGCTTGCCATCATTAAGGAGGCAGTAGAAAT 676546 Query 22722 TGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC 22781 |||| || | | || || || || || ||| | |||||||| || | | | Sbjct 676545 CGAACAAAATTTCCTGTCGGATGCTTTGCCGGTGAGTTTGATTGGTATGAACTGCAAGTT 676486 Query 22782 AATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAA 22841 ||| || || ||| |||| |||| || || || || || ||| || ||| ||| Sbjct 676485 GATGTGTCGCTACATTGAATTCATTGCGGACCGGCTTTTGGTTGAACTGGGACATGAAAA 676426 Query 22842 G 22842 | Sbjct 676425 G 676425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302648625812912