Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq168 100 2e-16 >seq168 Length=1129759 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| || || || ||||| || ||| |||| ||| | ||| Sbjct 735843 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAAACGATCACCCTCGAGGTTGAGGCTAGC 735784 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || || ||| ||||| |||||| |||| ||| ||| Sbjct 735783 GACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAG 735724 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||||| || ||||| ||||| || || | || || | || || ||| Sbjct 735723 CAACGCCTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAAC 735664 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || || |||||||||||| | || |||| ||| Sbjct 735663 ATCCAGAAAGAGTCTACTTTGCACTTGGTTTTG 735631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || || || ||||| || || || || || || | || ||| |||| Sbjct 736072 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCCAG 736013 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || || ||| ||||| |||||| |||| ||| || Sbjct 736012 TGACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 735953 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | ||||||| || |||||||| || || || | | || || | || || || Sbjct 735952 GCAACGCCTTATTTTCGCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTACAA 735893 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| || |||||||||||| | || ||||| Sbjct 735892 CATCCAGAAAGAGTCTACTCTTCACCTGGTG 735862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425125157321920