Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq168 111 1e-19 seq46 93.3 4e-14 seq666 87.8 2e-12 seq190 86.0 6e-12 >seq168 Length=1129759 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | ||| | || || || || || ||||||||||| Sbjct 774118 GCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGA 774177 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || || || ||||| || | || || || |||||||| || || Sbjct 774178 CAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGG 774237 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| ||| ||| | | ||| | ||||||| | | || | Sbjct 774238 GATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAAC 774297 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || |||||||| || || || ||||| ||||||||| Sbjct 774298 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774346 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | ||| | || || || || || ||||||||||| Sbjct 774346 GCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGA 774405 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || || || ||||| || | || || || |||||||| || || Sbjct 774406 CAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGG 774465 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| ||| ||| | | ||| | ||||||| | | || | Sbjct 774466 GATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAAC 774525 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || |||||||| || || || ||||| ||||||||| Sbjct 774526 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774574 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | ||| | || || || || || ||||||||||| Sbjct 774574 GCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGA 774633 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || || || ||||| || | || || || |||||||| || || Sbjct 774634 CAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGG 774693 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| ||| ||| | | ||| | ||||||| | | || | Sbjct 774694 GATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAAC 774753 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || |||||||| || || || ||||| ||||||||| Sbjct 774754 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774802 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | ||| | || || || || || ||||||||||| Sbjct 774802 GCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGA 774861 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || || || ||||| || | || || || |||||||| || || Sbjct 774862 CAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGG 774921 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| ||| ||| | | ||| | ||||||| | | || | Sbjct 774922 GATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAAC 774981 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || |||||||| || || || ||||| ||||||||| Sbjct 774982 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 775030 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 131003 ATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT 131062 || ||||||| || | |||| || || |||| || |||||||| ||||||||||||| Sbjct 773886 ATTAGCCACCACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAAT 773945 Query 131063 CGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCG 131122 | | ||| || || || || || ||||| || | || || || |||||||| | Sbjct 773946 CCGATAAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGG 774005 Query 131123 GAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACT 131182 | ||||| ||||| ||||| ||| ||| ||| | | ||| | ||||||| | | | Sbjct 774006 GTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTT 774065 Query 131183 CGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 | | || | ||| | || || || || ||||| || ||||| ||||||||| Sbjct 774066 CAACTTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| | ||| | || || || || || ||||||||||| Sbjct 775030 GCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGA 775089 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || || || ||||| || | || || || |||||||| || || Sbjct 775090 CAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGG 775149 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| ||| ||| | | ||| | ||||||| | | || | Sbjct 775150 GATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAAC 775209 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 775210 TTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 >seq46 Length=2247445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 240/363 (66%), Gaps = 12/363 (3%) Strand=Plus/Plus Query 144819 CGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGAAAGCGTTGC 144878 |||| |||||| || ||| || || || ||||| ||||| || || |||| | Sbjct 180233 CGTAGTTGGGCTGAGCAACATGTAAGTTGAGTGATTGACTTTGGTCGATAAAAGGCCCTC 180292 Query 144879 GGTCGGCGGCCATCTCAATCATACGTTTGCATTTC---ATTTCCCAAGCGGTCTTGTACA 144935 ||||||| ||||| ||||| || |||| | | |||||| ||| ||||| | Sbjct 180293 GGTCGGCCGCCATGTCAATTATC---TTGCGCTGAGAAAGTTCCCAGATGGTTTTGTAGA 180349 Query 144936 AACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGTGCGCAAATA 144995 | || || | || |||||||| | ||| |||||| || || | || || | | Sbjct 180350 GAGCCTTTATTTCATCAGGAATGCCTTGAATATCCTGAACAGAACCTTGGTTTGCCACAA 180409 Query 144996 TGGCG---TTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAATTAAGT 145052 ||||| || | ||||||| | | | || ||| | | ||| || || | | Sbjct 180410 TGGCGGACTTGAGTTCTTCGGACC---ATAATCCCAATTTGTTGAGGTCATCCATCAGAT 180466 Query 145053 ACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGA 145112 | ||||||||| || || || || | ||| || || | || ||||| |||| Sbjct 180467 AGGGATTGACGATTTGGAATTCACCACTGAGCACGCGGCGAGAGTAGACGTTGCTAGTGA 180526 Query 145113 AGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACG 145172 | ||||||| ||||||||| || ||||||||||| || |||| ||| || ||||| || Sbjct 180527 ACGGTTCAATAGACTCGTTGTTTCCCAGGATTTGTGCTGTCGATGCAGTTGGCATTGGCG 180586 Query 145173 CCA 145175 ||| Sbjct 180587 CCA 180589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCT 145682 || ||| || || | ||| |||||||| || || || |||| ||| || | || |||| Sbjct 181299 GGAGATAGAAGCGAGATTGCAAACTGCAGTTTCATCCGGCGA-GCTATACTCAACAATCT 181357 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGC 145742 | | |||| || ||||| ||||||||||||| || ||||| |||||||||| Sbjct 181358 CAGTACACAGGTTACTACACCGAATGGTTCCCAGATGCTGGTGATTGGACTTCCTGTTGC 181417 Query 145743 ACGCGTCCTTGTAGAGCATGTACGG 145767 | ||||| ||||| |||||| |||| Sbjct 181418 AAGCGTCTTTGTACAGCATGAACGG 181442 >seq666 Length=114481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131011 CCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATG 131070 ||||||||||| | || ||||| | || || |||||||||||||||||||| | Sbjct 72287 CCGCGCAAACGGATCATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGA 72228 Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 ||||| ||| || | |||||| ||||| | || ||||||||||| || ||||| || Sbjct 72227 GTGCGACCGTCTTCCAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATG 72168 Query 131131 CCTTCTTTGTC 131141 || || || || Sbjct 72167 CCCTCCTTATC 72157 >seq190 Length=1055212 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||||| || | ||| | ||| || || || |||||||||||||| Sbjct 796631 GCCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGA 796572 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| | || || ||||| || || ||||| Sbjct 796571 AAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGG 796512 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| | | || |||| | || | ||||| | | || | Sbjct 796511 GATCCCCTCCTTGTC-TTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAA 796453 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || || || || ||||| |||||||| Sbjct 796452 CCTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471763718845440