Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq168 154 1e-32 seq1862 111 1e-19 seq284 111 1e-19 seq190 95.1 8e-15 seq691 84.2 1e-11 seq24 84.2 1e-11 >seq168 Length=1129759 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| |||||||||| || || || || |||||||||||| Sbjct 774119 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774178 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | |||||| |||||||| || | |||||| || |||| ||| Sbjct 774179 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774238 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||||||||||| | |||||| | ||||||| Sbjct 774239 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774298 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || ||||| |||| ||| |||||||||||||||||| Sbjct 774299 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774346 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| |||||||||| || || || || |||||||||||| Sbjct 774347 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774406 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | |||||| |||||||| || | |||||| || |||| ||| Sbjct 774407 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774466 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||||||||||| | |||||| | ||||||| Sbjct 774467 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774526 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || ||||| |||| ||| |||||||||||||||||| Sbjct 774527 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774574 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| |||||||||| || || || || |||||||||||| Sbjct 774575 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774634 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | |||||| |||||||| || | |||||| || |||| ||| Sbjct 774635 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774694 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||||||||||| | |||||| | ||||||| Sbjct 774695 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774754 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || ||||| |||| ||| |||||||||||||||||| Sbjct 774755 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774802 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| |||||||||| || || || || |||||||||||| Sbjct 774803 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774862 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | |||||| |||||||| || | |||||| || |||| ||| Sbjct 774863 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774922 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||||||||||| | |||||| | ||||||| Sbjct 774923 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774982 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| || ||||| |||| ||| |||||||||||||||||| Sbjct 774983 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 775030 Score = 145 bits (160), Expect = 5e-30 Identities = 182/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 38073 ATACAAATCCAATCATTA-CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTT 38131 |||| ||| ||| |||| ||||| | | ||||| ||||| || |||||| |||||| Sbjct 773873 ATACGAATG-AATGATTAGCCACCACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTT 773931 Query 38132 TTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAG 38191 ||||| |||||||| || || |||| | || || | |||||| |||||||| || | Sbjct 773932 CTGAATGTTGTAATCCGATAAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAA 773991 Query 38192 GCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGAC 38251 |||||| || |||| |||| |||||| ||||| || || ||||||||||| | Sbjct 773992 GCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAAT 774051 Query 38252 AGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATAT 38311 |||||| | ||||||||| | || || || || || || | || ||||||||||| Sbjct 774052 AGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATAT 774111 Query 38312 CTGCATG 38318 ||||||| Sbjct 774112 CTGCATG 774118 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| |||||||||| || || || || |||||||||||| Sbjct 775031 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 775090 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | |||||| |||||||| || | |||||| || |||| ||| Sbjct 775091 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 775150 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||||||||||| | |||||| | ||||||| Sbjct 775151 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 775210 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | || |||||||| |||||||| Sbjct 775211 TCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 >seq1862 Length=2714 Score = 111 bits (122), Expect = 1e-19 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTAATCTCGTTAATC 25961 ||||||||||| ||||||||||||||||| ||||| || || || ||||||||||||| Sbjct 2632 AAGCCCGTTCCATTGGCTGTGGTTTCGCTGGATAGG-GACAGTAGG-AATCTCGTTAATC 2575 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||||||||||||||||||||| Sbjct 2574 CATTCGTGCGCGTCACTAATTAGATGACGA 2545 >seq284 Length=680834 Score = 111 bits (122), Expect = 1e-19 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 369869 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACT 369928 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | | ||||||||||| Sbjct 369929 CGTGCAAGTATTTAGCCTT 369947 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||| |||||||||||||||||||||| | |||||||| Sbjct 363581 AAGCCCATTCCCTTGGCTGTGATTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 363640 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||||| |||||| || || |||||||||||| Sbjct 363641 TAATCGATTCATGTACGCCATTAATTAGATGAC 363673 >seq190 Length=1055212 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | |||| |||| ||| || ||| || || ||||| ||||||||||| Sbjct 796630 CCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAA 796571 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | || ||||| || || || | || |||||||| | ||| Sbjct 796570 AGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGG 796511 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAAC 38269 | || || ||||| ||| || || ||||| | || ||||| | || |||||| Sbjct 796510 ATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATC-CGACGCTTCAAC 796452 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | |||||| || || ||||| | || || ||||| |||||||| || Sbjct 796451 CTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 >seq691 Length=96206 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || |||||||||| || | |||||||| ||||||||||||||||||||||||||| | || Sbjct 8537 TTACTCTCTCTTCTAAATACTTTTCAAATTTCCCTCACGGTACTTGTTCGCTATCAGACT 8478 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | | ||||| |||| Sbjct 8477 CGTGCAATTATTTGACCTT 8459 >seq24 Length=2986152 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| |||| |||||||| || ||||||||||| |||||||| || Sbjct 2656889 TTACTCTCTCTTCAAAGTGGTTTTTAACTTTCCGTCCCGGTACTTGTTTGCTATCGGACT 2656830 Query 20004 CGCGGTAATATTTAGCCTT 20022 | | | ||||||||||| Sbjct 2656829 GGTGCAAGTATTTAGCCTT 2656811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334774867153496