Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq276 100 4e-16 seq46 96.9 4e-15 seq53 91.5 2e-13 >seq276 Length=693516 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| ||||| || |||||||| || | ||| || || || | Sbjct 676621 CAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAAC 676680 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| | ||| || ||||| ||||||||||| | || || ||||| |||||| Sbjct 676681 CCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAA 676740 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAA 32805 || || || ||||| |||||||||| Sbjct 676741 ATGCCCTCGACTGCAGCAAAGGCAA 676765 >seq46 Length=2247445 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/257 (69%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || |||||||| | ||| ||| | | |||||| | | ||| ||||||| ||| Sbjct 183284 CCTGGACATTCGTGTGGATCCATGAGTGTCCACTCCTCATTGGCCTCCACTCGTCGCATG 183343 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141 |||| ||| || ||||| || || ||| || | ||| | | | ||| ||| || Sbjct 183344 AAGATATCCGGTATCCAGAGGGC-ATAGAACAAATCCCGACCACGAATTTCTTCGGCGCC 183402 Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201 ||||| ||| | || | |||| | | || | |||||||||||||| ||| | Sbjct 183403 AGTATTTTTTCGCATTTCAATGAACTGGAGGACGTCCGGATGCCACGGTTCCAGGTAGAC 183462 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 ||| | | | || || ||||| ||||| ||||| || ||||| | ||| ||||||||| | Sbjct 183463 GGCGAAAGCACCGGGGCGTTTATTTCCACCCTGGTCGATGTAGCGAGCAGTGTTATTAAA 183522 Query 63262 AACTCTCAACATTGGAA 63278 || | ||||||||||| Sbjct 183523 CACACGCAACATTGGAA 183539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/174 (72%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 63364 CATT-TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 63422 |||| || ||||| | || ||| ||| | || ||||| || || || ||||| || | Sbjct 184812 CATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCTTCGATACTGTCGT 184871 Query 63423 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63482 | |||| | | || |||||||| |||||||| | | | |||| || |||||| | Sbjct 184872 CTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTACCACTATTAAACA 184931 Query 63483 AGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63536 ||| || ||||| || |||||||| || || || | |||||||||||||| || Sbjct 184932 GGGTCGGTGAAGCATGGGTAAACCACTTCTCCGACATTAGATTGTACGTCTGAA 184985 >seq53 Length=2095963 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 155742 GAGTA--TACGAACCGGGAAAGAGAAGATGGTTAAAAATAAAGCGAGACTATTTGAACGA 155799 ||||| |||||||| |||||| || ||||| ||||| || |||||||||||| ||| Sbjct 32561 GAGTACTTACGAACCTGGAAAGCGACACTGGTTGAAAATCAAACGAGACTATTTGGCCGA 32620 Query 155800 GGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTGCTTACTATGGTAAAGG-AG 155858 ||| || ||||| ||||| | |||||| | ||| | || || |||||||| | || | Sbjct 32621 GGGATCGATGGCCGATTCGGTCGATTTGATCGTATTGGGAGCGTACTATGGGACCGGTAA 32680 Query 155859 CAAAGG 155864 |||||| Sbjct 32681 CAAAGG 32686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633297632393600