Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq276 176 5e-39 >seq276 Length=693516 Score = 176 bits (194), Expect = 5e-39 Identities = 513/790 (65%), Gaps = 39/790 (5%) Strand=Plus/Plus Query 92936 AATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCG 92995 ||||| ||||| || ||||||| | || ||||| || | | || || || | ||| Sbjct 676465 AATTCAATGTAGCGACACATCAACTTGCAGTTCATACCAATCAAACTCACCGGCAAAGCA 676524 Query 92996 TCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTA 93055 || | || ||||| || |||||| | || || || || | ||| | | || | | Sbjct 676525 TCCGACAGGAAATTTTGTTCGATTTCTACTGCCTCCTTAATGATGGCAAGCACACGATCC 676584 Query 93056 TTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCT 93115 |||| || ||||| || | || ||||| | | ||| || |||||| || | |||| Sbjct 676585 TTTGCAGGCTTTTGAACAATGTATTTGTATAACATGCAGGCGAAGTCGCAGTGCAGACCT 676644 Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 || |||| |||| ||||| ||||| ||||| || || | || || ||||| || Sbjct 676645 TCATCTCTACTGATCAGTTCATTACTGAAGGTTAACCCAGGCATCAAGCCGCGTTTTTTC 676704 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||||||||||| || || || ||||| || || || || || || || ||||| || Sbjct 676705 AGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATGCCCTCGACTGCAGCAAAGGCA 676764 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 || | ||| || ||||| | | | | || || ||||| || | ||||| | || Sbjct 676765 ACTAAACGCTCCGCAAACGTAGAGTGAGTATCGCCAATCCAGTTAAGCGCCCATTGCGCC 676824 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTC-GATAGCGTTAAATAGGTAATCTC-GC-----TC 93348 || | | | ||| ||| ||| | ||| ||||| || ||| |||| | || | Sbjct 676825 TTCTGCGCGACACATTCTAG-GTTGCTGATGGCGTTGAACAGGAAATCGCTGCGAGAGTA 676883 Query 93349 GTC-----------CG--AATCT---CGT---------------ATGTATGTATCGATTA 93377 ||| || || || ||| || || || || || | Sbjct 676884 GTCAATTGGAGAAGCGGAAACCTTACCGTTCTGTTGGATCTTTGATATACGTGTCAATCA 676943 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 || ||||||||||| ||||| | ||||| || || || || | ||||| ||||| | Sbjct 676944 GAAGTGAATACATTTCTGAATGTATGTTCTCAATCGCGATCTGCATCCCGTAAAAACACC 677003 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 | | |||| | || ||||| ||| || | ||| || ||||| || ||||| | Sbjct 677004 GAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTCGACCAGATTCTCTAGCACTATTC 677063 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 ||||| ||| ||||| || || || | || || || || ||| | | || | Sbjct 677064 CATCGCTTGCAGCAAAGAATGCTAACACATATGAGATGAAGTGACGCTCGCCGACCTTGA 677123 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | ||||||||| | ||| || || ||||| || ||||| || ||||||||||||| Sbjct 677124 GACTATCCCAATGACCAAAATCCTTGGAGAGATCAACCTCTTCAACGGTCCAAAACGATG 677183 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 | ||||||| || || | | ||| | || || ||||| || || |||| ||||| | Sbjct 677184 CGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTATTGGATGGGGAATAGAACAAATC 677243 Query 93678 GATTAGGGTT 93687 ||| ||||| Sbjct 677244 GATGCGGGTT 677253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556566944555840