Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq168 179 7e-40 seq190 150 3e-31 seq666 96.9 6e-15 >seq168 Length=1129759 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||||||||| ||||||||||| |||||||| || || ||||| ||||| || Sbjct 773891 CCACCACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGAT 773950 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | || || ||||| || || | | ||| ||||||||||| Sbjct 773951 AAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774010 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || ||| || || || || ||| ||| Sbjct 774011 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774070 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || || ||||| |||||||||||||| Sbjct 774071 TCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||||||||| |||||||| | || |||||||| |||||||| || || || Sbjct 735617 CCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 735676 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || || || || ||||| |||||||| || || | ||| ||||| ||||| Sbjct 735677 AATGTACGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 735736 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||| ||||||||||| ||||| ||| ||| || ||||| ||| | || || Sbjct 735737 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTC-GCTAGCCTCAAC 735795 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| ||||| || || ||||| || || || || ||||| Sbjct 735796 CTCGAGGGTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 Score = 158 bits (174), Expect = 2e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || || |||||||| |||||||| || || || Sbjct 735845 CCACCACGAAGGCGAAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 735904 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || ||||| || |||||||| || || | ||| ||||| ||||| Sbjct 735905 AACGTACGGCCGTCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 735964 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||||||||| ||||| ||| ||| || ||||| | || || Sbjct 735965 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACC 736024 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | ||||| || || || || || ||||| ||||| ||||||||| ||| Sbjct 736025 TCAAGAGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGTGC 736076 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| ||||| |||||||| ||||| || Sbjct 774119 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774178 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || ||||| || || | | ||| ||||||||||| Sbjct 774179 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774238 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || ||| || || || || ||| ||| Sbjct 774239 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774298 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || |||||||| |||||||||||||| Sbjct 774299 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| ||||| |||||||| ||||| || Sbjct 774347 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774406 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || ||||| || || | | ||| ||||||||||| Sbjct 774407 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774466 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || ||| || || || || ||| ||| Sbjct 774467 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774526 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || |||||||| |||||||||||||| Sbjct 774527 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| ||||| |||||||| ||||| || Sbjct 774575 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774634 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || ||||| || || | | ||| ||||||||||| Sbjct 774635 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774694 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || ||| || || || || ||| ||| Sbjct 774695 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774754 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || |||||||| |||||||||||||| Sbjct 774755 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| ||||| |||||||| ||||| || Sbjct 774803 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774862 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || ||||| || || | | ||| ||||||||||| Sbjct 774863 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774922 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || ||| || || || || ||| ||| Sbjct 774923 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774982 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || |||||||| |||||||||||||| Sbjct 774983 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || ||||| ||||| |||||||| ||||| || Sbjct 775031 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 775090 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || ||||| || || | | ||| ||||||||||| Sbjct 775091 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 775150 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||| || ||| || || || || ||| ||| Sbjct 775151 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 775210 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || || ||||| ||||| ||||||||| Sbjct 775211 TCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 >seq190 Length=1055212 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| || || ||||| ||||| || ||||| ||||| || || || | Sbjct 796621 AGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGG 796562 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | |||||| || ||||| || | || ||||| || || || || || ||| Sbjct 796561 CCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCCTCC 796502 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| || ||||| |||||||| || | | ||| || || | || Sbjct 796501 TTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCAAGTGTA 796442 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||||||||| ||||||||||| |||||||| Sbjct 796441 ATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 >seq666 Length=114481 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 ||| || || ||||| || ||||| ||||| ||||| ||||| || | || ||||| || Sbjct 72270 CAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAA 72211 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| || || || || | | || || || || |||||||| ||||| |||||||| Sbjct 72210 CTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAAT 72151 Query 68375 CTTTGCCTTGACGGCCTCGAT 68395 ||| || || ||| ||| || Sbjct 72150 CTTGGCTTTAACGTTCTCAAT 72130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921136059859520