Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq276 123 5e-23 seq46 102 2e-16 >seq276 Length=693516 Score = 123 bits (136), Expect = 5e-23 Identities = 206/294 (70%), Gaps = 13/294 (4%) Strand=Plus/Minus Query 42646 AGAAGGCGGACTGGGCGCTCAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 |||||||| | |||||||| |||||||| ||| | || || | ||||| | ||| Sbjct 676828 AGAAGGCGCAATGGGCGCTTAACTGGATTGGCGATACTC---ACTCTACGTTTGCGGAGC 676772 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | | || |||||| | || ||||||||||| |||||||| ||| ||||||| | || | Sbjct 676771 GTTTAGTTGCCTTTGCTGCAGTCGAGGGCATTTTCTTCTCTGGCAGCTTCGCCGCAATAT 676712 Query 42763 TCTGGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 | ||||| || | || | | | |||||| || | |||||| || ||||| ||||| Sbjct 676711 TTTGGCTGAA--AAAACGCGGCTTGATGCCTGGGTTAACCTTCAGTAATGAACTGATCAG 676654 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 || || || || ||||| | ||||| ||||| | |||| | | || | || Sbjct 676653 TAGAGATGAAGGTCTGCACTGCGACTTCGCCTG---CATGTTATACAAATACATTGTTCA 676597 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 ||||| | ||||| || || | |||||||| | |||||| || || ||||| Sbjct 676596 AAAGCCTGCAAAGGATCGTGTGCTTGCCATCATTAAGGAGGCAGTAGAAATCGA 676543 >seq46 Length=2247445 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| |||||||| || || |||||||| ||| ||||| ||||| |||||||||||| Sbjct 181345 TACTCAACAATCTCAGTACACAGGTTACTACACCGAATGGTTCCCAGATGCTGGTGATTG 181404 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 ||||| |||||| ||||| ||||| |||||||| || ||||| |||| ||| || Sbjct 181405 GACTTCCTGTTGCAAGCGTCTTTGTACAGCATGAACGGAGTTCCGGTTTCGATCTGAGC 181463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943840872204160