Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq498 82.4 6e-11 >seq498 Length=288213 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 115585 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 71602 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 71544 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 |||| | ||||| || ||||||||||| ||| || Sbjct 71543 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 71510 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGA 114388 || |||||||| ||||||||||||| || |||||||| ||| | ||| |||| ||||| Sbjct 71602 TGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAG-TATGTACGATCCAAGGA 71544 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 |||| | ||||| || ||||||||||| ||| || Sbjct 71543 ACCATAGCTGATTTAATGAGCCATTCGCGGTTTC 71510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396858108417232