Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq168 104 3e-17 seq127 91.5 2e-13 seq83 89.7 6e-13 seq98 87.8 2e-12 seq245 86.0 7e-12 seq176 86.0 7e-12 seq81 86.0 7e-12 seq666 82.4 8e-11 >seq168 Length=1129759 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| ||||| ||||| || ||| || || || ||||| |||| || || || || Sbjct 735629 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 735688 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | ||||| || ||||| || || || |||||||| | ||| | || ||||| Sbjct 735689 TCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735748 Query 42114 TCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| | || | | ||| | | | |||||||| | || || |||| ||||| Sbjct 735749 TCT-TGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGAT 735807 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||| || || || || |||||||||||||| Sbjct 735808 CGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq127 Length=1396385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 150222 AAAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 150281 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 150282 GACCACTATACTACCGAGGA 150301 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 150461 AAAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 150520 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 150521 GACCACTATACTACCGAGGA 150540 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| || |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 151197 AAAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 151138 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 151137 GACCACTATACTACCGAGGA 151118 >seq83 Length=1684914 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||| || |||| |||| | |||||||||| || || || ||||||||||||| ||||| Sbjct 682489 AAAGTTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTG 682548 Query 57060 ACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 682549 ACCACTATACTACCGAGGA 682567 >seq98 Length=1542432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 || |||| | |||| |||| | |||||||||| || || || ||||||||||||| || Sbjct 118235 TGGAAAAGCTGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGAT 118294 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| ||||||||||||||||||| Sbjct 118295 ACTGACCACTATACTACCGAGGA 118317 >seq245 Length=819584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 386800 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTGACCACTA 386741 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 386740 TACTACCGAGGA 386729 >seq176 Length=1095775 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 841409 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTGACCACTA 841468 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 841469 TACTACCGAGGA 841480 >seq81 Length=1739609 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 352208 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTGACCACTA 352149 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 352148 TACTACCGAGGA 352137 >seq666 Length=114481 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| | || |||||| | ||| ||||||||||| |||||||||| ||||| || Sbjct 72281 AAACGGATCATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGA 72222 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || | ||||||||| || || || | |||||||| || | || | || |||| Sbjct 72221 CCGTCTTCCAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 72162 Query 42111 TTGTC 42115 || || Sbjct 72161 TTATC 72157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542926146605440