Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq168 134 1e-26 seq666 109 5e-19 seq190 89.7 5e-13 seq46 86.0 6e-12 >seq168 Length=1129759 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| ||||||| || |||||||| || ||||||||||| | Sbjct 774119 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774178 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | |||||||| || ||||||||| |||| | || ||||||||||| || Sbjct 774179 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774238 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| ||| | ||||| | || || ||| Sbjct 774239 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774298 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||||| || || ||||| || ||||| Sbjct 774299 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| ||||||| || |||||||| || ||||||||||| | Sbjct 774347 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774406 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | |||||||| || ||||||||| |||| | || ||||||||||| || Sbjct 774407 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774466 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| ||| | ||||| | || || ||| Sbjct 774467 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774526 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||||| || || ||||| || ||||| Sbjct 774527 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| ||||||| || |||||||| || ||||||||||| | Sbjct 774575 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774634 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | |||||||| || ||||||||| |||| | || ||||||||||| || Sbjct 774635 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774694 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| ||| | ||||| | || || ||| Sbjct 774695 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774754 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||||| || || ||||| || ||||| Sbjct 774755 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| ||||||| || |||||||| || ||||||||||| | Sbjct 774803 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774862 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | |||||||| || ||||||||| |||| | || ||||||||||| || Sbjct 774863 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774922 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| ||| | ||||| | || || ||| Sbjct 774923 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774982 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| ||||||| || || ||||| || ||||| Sbjct 774983 TCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | |||||| ||||||| || |||||||| || ||||||||||| | Sbjct 775031 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 775090 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | |||||||| || ||||||||| |||| | || ||||||||||| || Sbjct 775091 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 775150 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || || ||| ||| ||| | ||||| | || || ||| Sbjct 775151 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 775210 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||||| || || | ||| || ||||| || |||||| Sbjct 775211 TCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| || || ||||| || |||||||| || | | || || |||| Sbjct 735859 AAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTC 735918 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | ||| |||||||| |||| || || |||||||| || || || ||||| || || Sbjct 735919 CTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 735978 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || ||| | ||| |||| ||| || || || | ||| | || Sbjct 735979 TTGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGT 736038 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||||||| || || ||||| || |||||| Sbjct 736039 CTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 736072 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||||||||| | | ||| || | ||||| || || |||||| Sbjct 773921 GTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATCTTCGAGTTGTTTGCCG 773980 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || ||||||||||| || || ||||| || ||||| || || ||| Sbjct 773981 GCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTC 774040 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | || || ||||| | || | ||||| || || | ||| Sbjct 774041 ACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTCCCAGTAAGAGTC 774100 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 774101 TTCACGAATATCTGCAT 774117 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | || || |||| || | ||||||||| Sbjct 735647 GTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTCCTCCAATTGCTTGCCG 735706 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || || |||||||| || || || ||||| || ||||| || || ||| Sbjct 735707 GCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCCTTC 735766 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||| || | || || || || | || | || ||||| |||| ||| Sbjct 735767 ACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCGTTTTGCCAGTCAGGGTT 735826 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 735827 TTCACAAAGATTTGCAT 735843 >seq666 Length=114481 Score = 109 bits (120), Expect = 5e-19 Identities = 116/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 || ||||||||| | | || | ||||| || ||||| ||||||||||||||||| | Sbjct 72291 ACTGCCGCGCAAACGGATCATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGA 72232 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| ||||||| | |||||| || ||| |||| | |||||||| || ||||| Sbjct 72231 GAGAGTGCGACCGTCTTCCAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGG 72172 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTA 64367 ||| || || || ||||| | | || |||||| Sbjct 72171 AATGCCCTCCTTATCTTG-AATCTTGGCTTTA 72141 >seq190 Length=1055212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||| |||||||||||||| | | || || |||| Sbjct 796615 AGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGGCCGTCC 796556 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || |||| | ||||| || || ||||| || || || || ||| Sbjct 796555 TCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCCTCCTTGTCT 796496 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | ||||| || || || || | || | ||| Sbjct 796495 TG-AATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCAAGTGTAATGGT 796437 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | || || ||||| || ||||| || Sbjct 796436 CTTTCCCGTGAGTGTCTTGACGAAGATCTGCATCTT 796401 >seq46 Length=2247445 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 154596 TTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAATTACTG 154655 |||||||| ||| |||| || | || || | ||||| || | |||| ||||| Sbjct 181315 TTGCAAACTGCAGTTTCATCCGGCGAGCTATACTCAACAATCTCAGTACACAGGTTACTA 181374 Query 154656 CATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGTACAAA 154715 || |||||||| ||||| | | ||||| || || ||||||| ||||||||||||| Sbjct 181375 CACCGAATGGTTCCCAGATGCTGGTGATTGGACTTCCTGTTGCAAGCGTCTTTGTACAGC 181434 Query 154716 ATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG 154755 ||| |||| || || ||||| | || | ||||| |||| Sbjct 181435 ATGAACGGAGTTCCGGTTTCGATCTGAGCCTCAATGATTG 181474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499381137439040