Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq168 96.9 3e-15 seq46 86.0 6e-12 >seq168 Length=1129759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| || || | |||||||| || || | | ||||| || || ||||||||||| Sbjct 735615 AGCCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAG 735674 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 || ||||| |||||| | ||| || |||| | || || || || ||||| || | Sbjct 735675 ACAATGTACGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTG 735734 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | || ||||| || || ||| | || | || | | || | |||||| | | ||| Sbjct 735735 GGATGCCTTCCTTATC-TTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCA 735793 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | |||||| |||||||| ||||| ||||| || ||||| Sbjct 735794 ACCTCGAGGGTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| || || | |||||||| || |||| | |||||||| ||||||||||| || Sbjct 773889 AGCCACCACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCG 773948 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||||| || ||||||||||| |||| | | || | || || ||||| || | Sbjct 773949 ATAAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTG 774008 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | || ||||| ||||| ||| || || | | || | || ||| | | || | Sbjct 774009 GGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAA 774068 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | ||| || ||||| ||||| || || || ||||||||| Sbjct 774069 CTTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 >seq46 Length=2247445 Score = 86.0 bits (94), Expect = 6e-12 Identities = 219/331 (66%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 152823 GATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCAT---GCGTTTT 152879 ||||| || || || || |||| |||||||||||||| ||||| || ||| | Sbjct 180265 GATTGACTTTGGTCGATAAAAGGCCCTCGGTCGGCCGCCATGTCAATTATCTTGCGCTGA 180324 Query 152880 GCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATG 152939 | | |||||| ||||||||| | | || | ||| || || |||| ||| Sbjct 180325 GAA---AGTTCCCAGATGGTTTTGTAGAGAGCCTTTATTTCATCAGGAATGCCTTGAATA 180381 Query 152940 TTCTGAATAGAGCCCTTGTGTGCAAAAATAGCG---TTTCGTATTTCGGGCGTGTACACG 152996 | ||||| ||| || | || ||| | ||| ||| || || ||||| | | | Sbjct 180382 TCCTGAACAGAACCTTGGTTTGCCACAATGGCGGACTTGAGTTCTTCGGACCATAATCC- 180440 Query 152997 TTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAAC 153056 || ||| |||||||||| |||| || | ||||| | ||| || || || | | Sbjct 180441 --CAATTTGTTGAGGTCATCCATCAGATAGGGATTGACGATTTGGAATTCACCACTGAGC 180498 Query 153057 ACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATT 153116 || || | | || || ||||||||||| ||||||| || ||||| || || || ||| Sbjct 180499 ACGCGGCGAGAGTAGACGTTGCTAGTGAACGGTTCAATAGACTCGTTGTTTCCCAGGATT 180558 Query 153117 TGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 || || || | ||| || ||||| ||||| Sbjct 180559 TGTGCTGTCGATGCAGTTGGCATTGGCGCCA 180589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496000522331520