Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq190 96.9 3e-15 seq168 95.1 1e-14 seq666 84.2 2e-11 >seq190 Length=1055212 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | | ||||| |||| ||| | || || ||||| ||||| |||||||| Sbjct 796630 CCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAA 796571 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| ||||| ||| | ||||||||||| ||||| ||||| Sbjct 796570 AGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGG 796511 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTC-TCGA 127064 || |||||||||| | ||| | | || |||| | ||||| ||| |||| || | || | Sbjct 796510 ATCCCCTCCTTGT-CTTGAATCTTGGCTTTGACATTTTCGATGGTATCCG-ACGCTTCAA 796453 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || || || || || || || || || |||||||| Sbjct 796452 CCTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 >seq168 Length=1129759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| || | ||||||||||| || || ||||| || | Sbjct 735617 CCACCACGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 735676 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || | || || || ||| | || | || ||||| || || || Sbjct 735677 AATGTACGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGG 735736 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || ||| ||| | | || | ||||| || ||| || Sbjct 735737 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACC 735796 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||||||| ||||| ||||| ||||| || ||||| Sbjct 735797 TCGAGGGTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq666 Length=114481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 126890 CCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATC 126949 ||||| || || | || |||||| | || || || |||||||| |||||||| | Sbjct 72287 CCGCGCAAACGGATCATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGA 72228 Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 |||||| || || | ||| || || || | ||||| ||||||||||| ||||| ||| Sbjct 72227 GTGCGACCGTCTTCCAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATG 72168 Query 127010 CCCTCCTTGTC 127020 |||||||| || Sbjct 72167 CCCTCCTTATC 72157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475249878227840