Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq168 104 2e-17 seq46 93.3 4e-14 >seq168 Length=1129759 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || ||| | || | ||||||||||| || || |||||||| ||| Sbjct 735689 TCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735748 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || || | || | || | |||||| || ||| || ||||| || | Sbjct 735749 TCTTGAATCTTCGCCTTCA-CGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGAT 735807 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||| || || ||||| ||||| |||||||| Sbjct 735808 CGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| ||||| || ||| | || | ||||||||||| || || |||||||| ||| Sbjct 735917 TCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735976 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || || | || | || | ||||| | |||||| || ||||| | Sbjct 735977 TCTTGAATCTTCGCCTTCA-CGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGAT 736035 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||| || || || || || || ||||| Sbjct 736036 CGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || ||||| || ||||| || ||||| ||| | || || ||| Sbjct 774136 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA--GACAGAGTTCGACCATCT 774193 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | |||||| || || | ||||| ||||||||||| || || |||||||| || ||| Sbjct 774194 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774253 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || || | || | || ||| | || ||||| || |||| ||| Sbjct 774254 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774313 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || || || ||||| Sbjct 774314 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || ||||| || ||||| || ||||| ||| | || || ||| Sbjct 774364 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA--GACAGAGTTCGACCATCT 774421 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | |||||| || || | ||||| ||||||||||| || || |||||||| || ||| Sbjct 774422 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774481 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || || | || | || ||| | || ||||| || |||| ||| Sbjct 774482 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774541 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || || || ||||| Sbjct 774542 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || ||||| || ||||| || ||||| ||| | || || ||| Sbjct 774592 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA--GACAGAGTTCGACCATCT 774649 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | |||||| || || | ||||| ||||||||||| || || |||||||| || ||| Sbjct 774650 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774709 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || || | || | || ||| | || ||||| || |||| ||| Sbjct 774710 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774769 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || || || ||||| Sbjct 774770 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| ||||| || || ||||| || ||||| || ||||| ||| | || || ||| Sbjct 774820 CACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA--GACAGAGTTCGACCATCT 774877 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | |||||| || || | ||||| ||||||||||| || || |||||||| || ||| Sbjct 774878 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774937 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || || || || | || | || ||| | || ||||| || |||| ||| Sbjct 774938 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774997 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || || || || ||||| Sbjct 774998 TTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 >seq46 Length=2247445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCA-G 123662 ||||||||||||| |||| |||||| ||||||||||| ||||||||||| ||||||| Sbjct 181456 TCGAAACCGGAACTCCGTTCATGCTGTACAAAGACGCTTGCAACAGGAAGTCCAATCACC 181397 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 |||| | ||||||| || |||||||| || || | || ||| | || || ||| Sbjct 181396 AGCATC-TGGGAACCATTCGGTGTAGTAACCTGTGTACTGAGATTGTTGAGTATAGCTCG 181338 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | ||| || || || || ||| | ||||| || Sbjct 181337 CCGGATGAAACTGCAGTTTGCAATCTCGCTTCTAT 181303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451764677911360