Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq168 114 3e-20 seq190 91.5 3e-13 >seq168 Length=1129759 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | ||| ||||| || |||| ||||||||||| ||| || Sbjct 735623 CGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTA 735682 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| ||||| |||||||| || || || |||||||| || || ||| Sbjct 735683 CGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 735742 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| || | ||||| | | || || || | Sbjct 735743 TCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGG 735802 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || || ||||||||||| ||||| Sbjct 735803 GTGATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTG 735840 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| ||||| ||||| || |||| ||||||||||| ||| || Sbjct 735851 CGAAGGCGAAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTA 735910 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| ||| || |||||||| || || || |||||||| || || ||| Sbjct 735911 CGGCCGTCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCT 735970 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| || | ||||| | | || || || | Sbjct 735971 TCCTTATCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGA 736030 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || ||||| || || || Sbjct 736031 GTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 736068 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| |||||||| || | |||||| || | || || Sbjct 773897 CGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTA 773956 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||| || || || ||||| || || | || |||||||| || || ||| Sbjct 773957 CGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCT 774016 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| || | || || ||| ||| || || | Sbjct 774017 TCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGG 774076 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| ||||| || || || Sbjct 774077 GTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTG 774114 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || || || |||| |||||| |||| || ||| | |||||| Sbjct 775046 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 775105 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| || || | || |||||||| || || ||||| || Sbjct 775106 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 775165 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | || || ||| ||| || || | ||||||||| Sbjct 775166 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTC 775225 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| || || || Sbjct 775226 TTCCCAGTAAGAGTCTTCACGAAGATCTG 775254 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || || || |||| |||||| |||| || ||| | |||||| Sbjct 774134 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774193 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| || || | || |||||||| || || ||||| || Sbjct 774194 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774253 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | || || ||| ||| || || | || |||||| Sbjct 774254 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774313 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 774314 TTACCGGTCAGGGTCTTCACGAATATCTG 774342 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || || || |||| |||||| |||| || ||| | |||||| Sbjct 774362 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774421 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| || || | || |||||||| || || ||||| || Sbjct 774422 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774481 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | || || ||| ||| || || | || |||||| Sbjct 774482 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774541 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 774542 TTACCGGTCAGGGTCTTCACGAATATCTG 774570 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || || || |||| |||||| |||| || ||| | |||||| Sbjct 774590 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774649 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| || || | || |||||||| || || ||||| || Sbjct 774650 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774709 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | || || ||| ||| || || | || |||||| Sbjct 774710 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774769 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 774770 TTACCGGTCAGGGTCTTCACGAATATCTG 774798 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || || || |||| |||||| |||| || ||| | |||||| Sbjct 774818 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774877 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| || || | || |||||||| || || ||||| || Sbjct 774878 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774937 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | || || ||| ||| || || | || |||||| Sbjct 774938 TGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTC 774997 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || Sbjct 774998 TTACCGGTCAGGGTCTTCACGAATATCTG 775026 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||| |||||||| || |||||||| || || | || ||| | || |||||| ||||| Sbjct 735945 CTTATTTTCGCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTACAACATCCAG 735886 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 |||||||||||||||||||| || Sbjct 735885 AAAGAGTCTACTCTTCACCTGGT 735863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||| |||||||| ||||| ||||| || || | || ||| | || |||||| ||||| Sbjct 735717 CTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAACATCCAG 735658 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||| | ||| | |||||| | ||||| Sbjct 735657 AAAGAGTCTACTTTGCACTTGGTTTTGCGCCTTCG 735623 >seq190 Length=1055212 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| |||||| || || || || || || || || | |||||| |||| | ||| | Sbjct 796621 AGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGG 796562 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || || |||||||||||||| ||||| || | ||||| || || ||| || || || Sbjct 796561 CCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCCTCC 796502 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| || || ||||| ||| || | | ||| || || | || Sbjct 796501 TTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCAAGTGTA 796442 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| |||||||| || || || || || || Sbjct 796441 ATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTG 796407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178283930148472