Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq276 183 3e-41 seq168 96.9 3e-15 >seq276 Length=693516 Score = 183 bits (202), Expect = 3e-41 Identities = 442/667 (66%), Gaps = 43/667 (6%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| | | || ||| || |||||||| |||| || || || || || ||||| || Sbjct 676609 TTGTATAACATGCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTA 676668 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||||| || || || ||||| | |||||||||||| ||||||||||| |||||||| ||| Sbjct 676669 CTGAAGGTTAACCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTG 676728 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 || || ||||| | ||||||||| || || || || || | ||||| | ||||| | Sbjct 676729 CCAGAGAAGAAAATGCCCTCGACTGCAGCAAAGGCAACTAAACGCTCCGCAAACGTAGAG 676788 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | | | | |||||| |||||||||| ||||| | ||| || | ||| Sbjct 676789 TGAGTATCGCCAATCCAGTTAAGCGCCCATTGCGCCTTCTGCGCGACACATTCTAG-GTT 676847 Query 133123 TC-GATGGCGTTCAACA----AACG------GAGTT-TCTCTTCCGAGGAACGCA----- 133165 | ||||||||| |||| | || |||| || || ||| | || | Sbjct 676848 GCTGATGGCGTTGAACAGGAAATCGCTGCGAGAGTAGTCAATTG-GAGAAGCGGAAACCT 676906 Query 133166 ---CGT-------------------AGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203 ||| | ||||| || || ||||||||||| || ||| Sbjct 676907 TACCGTTCTGTTGGATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGT 676966 Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263 | |||||| || ||||| || | |||||||| ||||| |||| || || ||||| Sbjct 676967 ATGTTCTCAATCGCGATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCC 677026 Query 133264 TGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323 ||| |||||||||||||||||| || || || || ||||| || || || || || Sbjct 677027 TGACTGAAACGCTCGACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCT 677086 Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCC 133383 | ||| | |||||| || |||||| | | || | | ||||| | | ||| Sbjct 677087 AACACATATGAGATGAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCC 677146 Query 133384 TTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT- 133442 ||||| || || ||||| || |||||||||||||| || | ||||| || || | ||| Sbjct 677147 TTGGAGAGATCAACCTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATA-AAACTG 677205 Query 133443 CCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAG 133502 ||| | || ||||| ||||| || | ||||| || | |||||| |||||| Sbjct 677206 CCAAACATCGTGGTATTGGATGGGGAATAGAACAAATCGATGCGGGTTTGGTTTCAACAG 677265 Query 133503 CGGCTCC 133509 || ||| Sbjct 677266 AGGTTCC 677272 >seq168 Length=1129759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || ||||| || ||||| || ||||| | || |||||||||| Sbjct 736072 AATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCCAG 736013 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || || | || || || || || || | |||| Sbjct 736012 TGACACAATTGAGAACG-TGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACC 735954 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || |||| ||| ||||||||| |||| |||| || || | ||||||| Sbjct 735953 AGCAACGCCTTATTTTCGCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTACA 735894 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || || | || || || ||||||| || Sbjct 735893 ACATCCAGAAAGAGTCTACTCTTCACCTGGTGCTTCG 735857 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || |||||||| |||||| |||| || ||||| | | Sbjct 735843 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAAACGATCACCCTCGAGGTTGAGGCTAGC 735784 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || || || || || | ||||| Sbjct 735783 GACACAATTGAGAACG-TGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCA 735725 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| ||||| || |||| |||| || || | |||||||| Sbjct 735724 GCAACGCCTTATTTTCGCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAA 735665 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | || |||| ||||| |||| Sbjct 735664 CATCCAGAAAGAGTCTACTTTGCACTTGGTTTTGCG 735629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || || |||||| | || || || || | Sbjct 775258 AATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 775199 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | || | || |||| ||||| || || || || ||||||| Sbjct 775198 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 775139 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| || |||||||| || || || | || || || || ||||| Sbjct 775138 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 775079 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||| | || || ||| ||||||| ||| || | || ||| Sbjct 775078 CATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 775030 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || || || || || || ||| | || || || || | | Sbjct 774345 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774286 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| || || || || ||||||| Sbjct 774285 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774226 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| || || || | || || || || |||||| Sbjct 774225 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774166 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| ||||||| ||| || | || ||| Sbjct 774165 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774118 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || || || || || || ||| | || || || || | | Sbjct 774573 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774514 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| || || || || ||||||| Sbjct 774513 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774454 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| || || || | || || || || |||||| Sbjct 774453 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774394 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| ||||||| ||| || | || ||| Sbjct 774393 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774346 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || || || || || || ||| | || || || || | | Sbjct 774801 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774742 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| || || || || ||||||| Sbjct 774741 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774682 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| || || || | || || || || |||||| Sbjct 774681 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774622 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| ||||||| ||| || | || ||| Sbjct 774621 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774574 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || || || || || || || ||| | || || || || | | Sbjct 775029 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774970 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | || |||| ||||| || || || || ||||||| Sbjct 774969 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774910 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || |||||||| || || || | || || || || |||||| Sbjct 774909 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774850 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || ||| ||||||| ||| || | || ||| Sbjct 774849 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499908858813440