Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq233 170 8e-37 seq121 127 8e-24 seq168 114 5e-20 seq129 84.2 9e-11 >seq233 Length=855571 Score = 170 bits (188), Expect = 8e-37 Identities = 260/369 (70%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 451235 ACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAA 451294 || || ||||| |||||||| || | ||||| || ||| ||||| |||| || ||| Sbjct 105694 ACGTTCGCTCCGGAAGAAATATCGGCAATGGTCCTCGGTAAGATGAAGGAAAGTGCTGAA 105753 Query 451295 CAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGAT 451354 ||| | || ||||| || | || || || ||||||||||| || || || ||| Sbjct 105754 GCTTATTTGGGCAAACCAGTCACGCACGCCGTCATCACTGTTCCCGCCTACTTTAACGAT 105813 Query 451355 GCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATT 451414 ||||| || ||||| || || ||||| || ||| |||||| | || || || ||||| Sbjct 105814 GCACAGCGACAAGCCACAAAGGATGCTGGTGTTATCGCTGGTCTTAAAGTGCTGCGAATA 105873 Query 451415 ATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAA 451474 || || || ||||| || ||||| | |||||||| ||| || ||| || | Sbjct 105874 ATCAACGAGCCTACGGCTGCTGCCATCGCATATGGTTTAGACAA---AAAGGA---GGGT 105927 Query 451475 GaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA 451534 ||||| || ||| | || | ||||| |||||||| ||| |||| ||| | | | Sbjct 105928 GAAAAGAACATTCTGGTGTACGATTTGGGTGGAGGCACTTTTGATGTTTCCTTGTTGACC 105987 Query 451535 ATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAA 451594 ||||| |||| || || || ||| |||||||| ||||||||| ||| | |||||||| Sbjct 105988 ATTGAGAATGGCGTGTTCGAGGTAGTGGCAACCAGTGGTGATACGCATTTGGGAGGTGAG 106047 Query 451595 GATATTGAT 451603 || ||||| Sbjct 106048 GACTTTGAT 106056 >seq121 Length=1419867 Score = 127 bits (140), Expect = 8e-24 Identities = 262/390 (67%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || |||||||| | || || || | || ||||| || || || ||||| || || || Sbjct 1167077 TACAAAGGTGAGATCAAGACGTTCTCGCCAGAAGAGATATCGTCGATGGTGCTGACAAAG 1167136 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || ||||| || ||| | || | ||| | ||||| || ||||||||| Sbjct 1167137 ATGAAGGAGACAGCTGAGGCGTATCTGGGCACGAAAGTGAAGGATGCTGTGATTACTGTT 1167196 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || ||||| ||||| || || || ||||| || || ||||| || |||||||| Sbjct 1167197 CCGGCTTACTTCAACGACAGCCAGCGTCAAGCGACGAAGGATGCGGGTGCCATTGCTGGC 1167256 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456 | |||||| | || || || || ||||| ||||| || || | ||||| || |||| Sbjct 1167257 CTCAATGTTTTGCGTATCATCAACGAACCGACAGCTGCGGCGATTGCATACGGGCTAGAC 1167316 Query 451457 AAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516 || | | | || || | || | | | |||||| | ||||| || || | Sbjct 1167317 AAGAAAGTGGGTAAAGGTGAGCGACATGTGCTGATCTTTGATCTCGGTGGTGGTACGTTT 1167376 Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 ||| ||| | || | || || || || ||||| ||||| ||| | || ||||| Sbjct 1167377 GATGTTTCCATCCTCACCATCGACGAGGGTGTATTCGAAGTGAAGTCGACGGCCGGTGAC 1167436 Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || ||||| || ||||| ||| | |||||| Sbjct 1167437 ACGCATCTGGGTGGTGAGGATTTCGATAAT 1167466 Score = 122 bits (134), Expect = 3e-22 Identities = 261/390 (67%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || |||||||| | || || || | || || || || || || ||||| || || || Sbjct 1093209 TACAAAGGTGAGATCAAGACGTTCTCGCCAGAGGAGATATCGTCGATGGTGCTGACAAAG 1093150 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || ||||| || ||| | || | ||| | ||||| || ||||||||| Sbjct 1093149 ATGAAGGAGACAGCCGAGGCGTATCTGGGCACGAAAGTGAAGGATGCTGTGATTACTGTT 1093090 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || ||||| ||||| || || || ||||| || || ||||| || |||||||| Sbjct 1093089 CCGGCTTACTTCAACGACAGCCAGCGTCAAGCGACGAAGGATGCGGGTGCCATTGCTGGC 1093030 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456 | |||||| | || || || || ||||| ||||| || || | ||||| || |||| Sbjct 1093029 CTCAATGTTTTGCGTATCATCAACGAACCGACAGCTGCGGCGATCGCATACGGGCTAGAC 1092970 Query 451457 AAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516 || | | | || || | || | | | |||||| | ||||| || || | Sbjct 1092969 AAGAAAGTGGGTAAAGGTGAGCGACATGTGCTGATCTTTGATCTCGGTGGTGGTACGTTT 1092910 Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 ||| ||| | || | || || || || ||||| ||||| ||| | || ||||| Sbjct 1092909 GATGTTTCCATCCTCACCATCGACGAGGGTGTATTCGAAGTGAAGTCGACGGCCGGTGAC 1092850 Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || ||||| || ||||| ||| | |||||| Sbjct 1092849 ACGCATCTGGGTGGTGAGGATTTCGATAAT 1092820 Score = 111 bits (122), Expect = 6e-19 Identities = 242/360 (67%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 || || || || || ||||| | || |||||||| || ||||| ||| |||| | ||| Sbjct 1279892 GAGGAGATATCTTCAATGGTGTTGACGAAAATGAAGGAGACAGCCGAAGCATATCTGGGT 1279833 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 | || | ||||| || ||||||||||| ||||||||||| || || || ||| Sbjct 1279832 ACGAAGGTGAAGGATGCCGTGATTACTGTTCCGGCTTATTTCAACGACAGCCAGCGTCAA 1279773 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || || ||||| || |||||||| | || ||| | ||||| || || ||||| Sbjct 1279772 GCCACGAAGGATGCGGGTGCCATTGCTGGCCTGAACGTTTTGCGAATCATCAACGAACCG 1279713 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA-AAAGAAACAGAAGaaaaaaaTAT 451485 ||||| ||||| | || ||||| | ||| || | | || || | || | Sbjct 1279712 ACAGCTGCTGCGATTGCTTATGG-TTTGGACAAGAAGGTGGGTGGAGGTGAGCGACATGT 1279654 Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545 || | |||||| | ||||| || || ||| ||| | || | || || ||||| Sbjct 1279653 ATTGATCTTTGATCTCGGTGGTGGTACGTTCGATGTTTCCATCCTCACGATCGACGATGG 1279594 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| ||| | || ||||| || ||| | || ||||| ||| | ||||| Sbjct 1279593 TGTTTTCGAAGTGAAGTCGACGGCGGGTGACACGCATTTGGGCGGTGAGGATTTCGATAA 1279534 Score = 111 bits (122), Expect = 6e-19 Identities = 242/360 (67%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 || || || || || ||||| | || |||||||| || ||||| ||| |||| | ||| Sbjct 1319184 GAGGAGATATCTTCAATGGTGTTGACGAAAATGAAGGAGACAGCCGAAGCATATCTGGGT 1319125 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 | || | ||||| || ||||||||||| ||||| |||||||| || || ||| Sbjct 1319124 ACGAAGGTGAAGGATGCTGTGATTACTGTTCCGGCTTACTTCAATGACAGCCAGCGTCAA 1319065 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || || ||||| || |||||||| | || ||| | ||||| || || ||||| Sbjct 1319064 GCGACGAAGGATGCGGGTACGATTGCTGGCCTGAACGTTTTGCGAATAATCAACGAACCG 1319005 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA-AAAGAAACAGAAGaaaaaaaTAT 451485 ||||| ||||| | || ||||| | ||| || | | || || | || | Sbjct 1319004 ACAGCTGCTGCGATTGCTTATGG-TTTGGACAAGAAGGTGGGTGGAGGTGAGCGACATGT 1318946 Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545 || | |||||| | ||||| || || ||| ||| | || | || || ||||| Sbjct 1318945 ATTGATCTTTGATCTCGGTGGTGGTACGTTCGATGTTTCCATCCTCACGATCGACGATGG 1318886 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| ||| | || ||||| || ||| | || ||||| ||| | ||||| Sbjct 1318885 TGTTTTCGAAGTGAAGTCGACGGCGGGTGACACGCATTTGGGCGGTGAGGATTTCGATAA 1318826 >seq168 Length=1129759 Score = 114 bits (126), Expect = 5e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| ||||| || ||||| ||||| |||||| || Sbjct 774345 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774286 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || || ||||| |||||||| || || || || || Sbjct 774285 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774226 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || ||||||||||||||||| ||||| || | ||||| || Sbjct 774225 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774166 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 774165 ATCCAGAAAGAATCCACTCTTCA 774143 Score = 114 bits (126), Expect = 5e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| ||||| || ||||| ||||| |||||| || Sbjct 774573 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774514 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || || ||||| |||||||| || || || || || Sbjct 774513 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774454 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || ||||||||||||||||| ||||| || | ||||| || Sbjct 774453 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774394 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 774393 ATCCAGAAAGAATCCACTCTTCA 774371 Score = 114 bits (126), Expect = 5e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| ||||| || ||||| ||||| |||||| || Sbjct 774801 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774742 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || || ||||| |||||||| || || || || || Sbjct 774741 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774682 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || ||||||||||||||||| ||||| || | ||||| || Sbjct 774681 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774622 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 774621 ATCCAGAAAGAATCCACTCTTCA 774599 Score = 114 bits (126), Expect = 5e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| ||||| || ||||| ||||| |||||| || Sbjct 775029 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774970 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || || ||||| |||||||| || || || || || Sbjct 774969 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774910 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || ||||||||||||||||| ||||| || | ||||| || Sbjct 774909 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774850 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 774849 ATCCAGAAAGAATCCACTCTTCA 774827 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| || || || || ||||| |||||| || Sbjct 775258 AATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 775199 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||| | | || || || ||||| |||||||| || || || || || Sbjct 775198 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 775139 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||| || ||||| | || ||||||||||||||||| ||||| || | ||||| || Sbjct 775138 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 775079 Query 391229 TATTGATAAGGATGCAACACTTCA 391252 || | || || | || ||||| Sbjct 775078 CATCCAGAAAGAATCCACTCTTCA 775055 >seq129 Length=1394800 Score = 84.2 bits (92), Expect = 9e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 248488 CATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATCA 248547 ||||||||||| || || ||||||| | | |||| ||||||||| ||||| | Sbjct 342689 CATGGACAAAAGGGTACTTGTGGTATTCGGTACCGACAAGAAGATATGCCGTTCACTTGT 342748 Query 248548 GAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTATG 248607 ||||| || ||||||||| | || ||||||| || | ||| || | ||||||||||| Sbjct 342749 GAAGGCATTACTCCAGATATCATCATCAATCCCCACGCTATCCCCAGTCGTATGACTATC 342808 Query 248608 GGACAATTA 248616 || || ||| Sbjct 342809 GGTCACTTA 342817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974649748735328