Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq46 87.8 2e-12 >seq46 Length=2247445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 238/361 (66%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 109498 AAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATA 109557 ||||| | || ||| || ||||| || | || || || ||||||||||| || || Sbjct 180256 AAGTTGAGTGATTGACTTTGGTCGATAAAAGGCCCTCGGTCGGCCGCCATGTCAATTAT- 180314 Query 109558 CACTTT---TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATG 109614 ||| || || |||||||| || ||||| | | ||| || ||||| |||||| Sbjct 180315 --CTTGCGCTGAGAAAGTTCCCAGATGGTTTTGTAGAGAGCCTTTATTTCATCAGGAATG 180372 Query 109615 TCCACGATGTTTTGAATAGAGCCACCAGCCTT--CACCATGAGATCCTTCATCTCTTTCG 109672 | || | |||| ||| || | || ||| ||| ||| | |||| | Sbjct 180373 CCTTGAATATCCTGAACAGAACCTT--GGTTTGCCACAATGGCGGACTTGAGTTCTTCGG 180430 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCAC 109732 |||| | || | || ||||| || || | |||| ||||| | ||||||| Sbjct 180431 ACCATAATCCCAATTTGTTGAGGTCATCCATCAGATAGGGATTGACGATTTGGAATTCAC 180490 Query 109733 CAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGC 109792 || || ||| || ||||| ||| | ||| | ||||| | | |||| ||||| | Sbjct 180491 CACTGAGCACGCGGCGAGAGTAGACGTTGCTAGTGAACGGTTCAATAGACTCGTTGTTTC 180550 Query 109793 CTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGAC 109852 | ||||||||||| || || || || ||||| || |||| || ||||||||||||| || Sbjct 180551 CCAGGATTTGTGCTGTCGATGCAGTTGGCATTGGCGCCAGAAGGAGACTGTTTCGGACAC 180610 Query 109853 C 109853 | Sbjct 180611 C 180611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588665197364800