Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq190 150 4e-31 seq168 143 6e-29 seq666 116 8e-21 >seq190 Length=1055212 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||||| || || || || || ||||| ||||| ||||| |||||||| | |||||| Sbjct 796624 CTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTA 796565 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | || || || |||||||| || ||||| || | ||| ||||| |||||||| || || Sbjct 796564 CGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCC 796505 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||||||||| || ||||| || || ||||| ||||| ||| || ||||| Sbjct 796504 TCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCAAGT 796445 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | || || ||||| | ||||| Sbjct 796444 GTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 >seq168 Length=1129759 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||||||||| ||||| || || |||||||| | ||||||| |||||||| Sbjct 774137 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774196 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||| ||||| || || |||||||| |||||||| Sbjct 774197 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774256 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || || ||| ||||||||||||| |||||| Sbjct 774257 ATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTA 774316 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 774317 CCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||||||||| ||||| || || |||||||| | ||||||| |||||||| Sbjct 774365 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774424 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||| ||||| || || |||||||| |||||||| Sbjct 774425 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774484 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || || ||| ||||||||||||| |||||| Sbjct 774485 ATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTA 774544 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 774545 CCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||||||||| ||||| || || |||||||| | ||||||| |||||||| Sbjct 774593 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774652 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||| ||||| || || |||||||| |||||||| Sbjct 774653 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774712 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || || ||| ||||||||||||| |||||| Sbjct 774713 ATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTA 774772 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 774773 CCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||||||||| ||||| || || |||||||| | ||||||| |||||||| Sbjct 774821 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774880 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||| ||||| || || |||||||| |||||||| Sbjct 774881 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774940 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || || ||| ||||||||||||| |||||| Sbjct 774941 ATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTA 775000 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 775001 CCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||||||||| ||||| || || |||||||| | ||||||| |||||||| Sbjct 775049 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 775108 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || | ||||| ||||| || || |||||||| |||||||| Sbjct 775109 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 775168 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || || ||| ||||||||||| | |||||| Sbjct 775169 ATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTC 775228 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||| || ||||| | |||||| Sbjct 775229 CCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | ||| ||||||||||| || ||||| |||||||| | | || | ||||| Sbjct 773905 CAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATC 773964 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||| || || || || || || | ||||| ||||| || || |||||||| ||||| Sbjct 773965 TTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774024 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| || |||||||| || || ||| ||||||||||| | ||| Sbjct 774025 TTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGT 774084 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | ||| || ||||| | ||||| Sbjct 774085 CTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| |||||||| || || ||||| || | | || | || || || Sbjct 735863 ACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTCC 735922 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || || ||||| ||||| ||||| ||||| || || |||||||| || |||||| Sbjct 735923 AACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 735982 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||||| ||||| ||| || || ||||| || | |||| Sbjct 735983 ATCTTCGCCTTCACGTTCTCAATTGTGTC---ACTGGCCTCGACCTCAAGAGTGATCGTC 736039 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || |||| || || ||||| | |||||| Sbjct 736040 TTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 736072 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | ||| | ||| |||||||| || || ||||| || | | || | || || Sbjct 735631 CAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 735690 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || | ||||| || ||||| ||||| ||||| ||||| || || |||||||| || || Sbjct 735691 CTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 735750 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||| ||||||||||| ||||| | || || || ||||| | ||| Sbjct 735751 TTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCGT 735810 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| ||||| || || | |||||| Sbjct 735811 TTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq666 Length=114481 Score = 116 bits (128), Expect = 8e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || |||||||| |||||||| | ||||| | || ||||| | |||| Sbjct 72266 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAACTGC 72207 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| || || | || || || |||||||||||||| || || |||||||| || Sbjct 72206 TTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAATCTTG 72147 Query 195058 TGCTTGACGTTCTCAAT 195074 || ||||||||||| Sbjct 72146 GCTTTAACGTTCTCAAT 72130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108881489723672