Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq190 120 2e-22 seq168 113 3e-20 >seq190 Length=1055212 Score = 120 bits (132), Expect = 2e-22 Identities = 149/200 (75%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || ||||| | || | || |||||||| ||||| || || Sbjct 796595 TTCTTTCTGAATGTTGTAATCAGAAAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAA 796536 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | ||| || || ||| | || | |||||||||||| |||||| |||||| | Sbjct 796535 AATCAATCGCTGTTGATCTGGAGGGATCCCCTCCTTGTCTTGAATCTTGGCTTTGAC--A 796478 Query 34910 TGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| || ||||| || | || ||||| ||||||||||| |||| Sbjct 796477 T--TTTCGATGGTATCCGACGCTTCAACCTCAAGTGTAATGGTCTTTCCCGTGAGTGTCT 796420 Query 34966 TCACAAAGATCTGCATATTC 34985 | || ||||||||||| ||| Sbjct 796419 TGACGAAGATCTGCATCTTC 796400 >seq168 Length=1129759 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||||||||| | ||| || ||||||||||| || ||||| | | | ||| |||| Sbjct 773905 CAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATC 773964 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || ||||| |||||||| || | ||||||||||| | || | || |||||||| Sbjct 773965 TTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTC 774024 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| || || || || || | || | || ||||| || | ||| || Sbjct 774025 TTGGATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATC 774082 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||||||||| || |||||||| Sbjct 774083 GTCTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| || || || || |||| |||| || Sbjct 775049 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 775108 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| |||||||| || | ||||||||||| | || | || |||||||| Sbjct 775109 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 775168 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || || | || | || ||||| || | ||| || || | Sbjct 775169 ATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCT 775226 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||||||||| ||||||||||| Sbjct 775227 TCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||||||||| | || |||||||| ||||| ||||| || | | || | || Sbjct 735631 CAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCGTC 735690 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || || ||||| || || || ||||||||||| | || | || ||||| || Sbjct 735691 CTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATC 735750 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||||| || ||| | || | || | |||||||| |||| ||| || || Sbjct 735751 TTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCGT 735810 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || || || || ||||||||||| |||||| Sbjct 735811 TTTGCCAGTCAGGGTTTTCACAAAGATTTGCATA 735844 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || |||||||| ||||| ||||| || | | || | || ||| Sbjct 735863 ACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTCC 735922 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| ||||| || || || ||||||||||| | || | || ||||| || | Sbjct 735923 AACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGA 735982 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | |||| |||||| || || | || || || || Sbjct 735983 ATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCTTG 736042 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 736043 CCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| || || || || |||| |||| || Sbjct 774137 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774196 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| |||||||| || | ||||||||||| | || | || |||||||| Sbjct 774197 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774256 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || || | || | || ||||| || | ||| || || | Sbjct 774257 ATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774314 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| || |||||||| Sbjct 774315 TACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| || || || || |||| |||| || Sbjct 774365 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774424 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| |||||||| || | ||||||||||| | || | || |||||||| Sbjct 774425 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774484 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || || | || | || ||||| || | ||| || || | Sbjct 774485 ATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774542 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| || |||||||| Sbjct 774543 TACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| || || || || |||| |||| || Sbjct 774593 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774652 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| |||||||| || | ||||||||||| | || | || |||||||| Sbjct 774653 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774712 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || || | || | || ||||| || | ||| || || | Sbjct 774713 ATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774770 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| || |||||||| Sbjct 774771 TACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| || || || || |||| |||| || Sbjct 774821 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCA 774880 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| |||||||| || | ||||||||||| | || | || |||||||| Sbjct 774881 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774940 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || || | || | || ||||| || | ||| || || | Sbjct 774941 ATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCT 774998 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| || |||||||| Sbjct 774999 TACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324466573578048