Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq276 150 2e-31 seq46 86.0 7e-12 >seq276 Length=693516 Score = 150 bits (166), Expect = 2e-31 Identities = 418/636 (66%), Gaps = 49/636 (8%) Strand=Plus/Plus Query 18959 AACATGCA----AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 |||||||| || || || || || || || |||||||| |||| ||||||| || Sbjct 676615 AACATGCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAG 676674 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 ||||| |||||||||| || | |||||| | ||| ||||| | || || ||||| Sbjct 676675 GTTAACCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAG 676734 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134 ||||| || || || ||||| ||||| ||||||| | || || | ||| | | || Sbjct 676735 AAGAAAATGCCCTCGACTGCAGCAAAGGCAACTAAACGCTCCGCAAACGTAGAGTGAGTA 676794 Query 19135 TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT--------------G 19180 | |||||| || || ||||| | ||||||| |||||| | Sbjct 676795 TCGCCAATCCAGTTAAGCGCCCATTGCGCCTTCTGCGCGACACATTCTAGGTTGCTGATG 676854 Query 19181 GCATTG---------TCTCT---ATAGAATTAAAT---AGATAC--ATACGCTCA----T 19219 || ||| || || | || | | ||| ||| | | || || | | Sbjct 676855 GCGTTGAACAGGAAATCGCTGCGAGAGTAGTCAATTGGAGAAGCGGAAAC-CTTACCGTT 676913 Query 19220 CTGT---ATCTTTAACATATGCATCTATCAATAAACTG--TACATTTCTGAATGAATATT 19274 |||| |||||| | ||| | || |||| || || |||||||||||||| || || Sbjct 676914 CTGTTGGATCTTTGATATACGTGTCAATCAG--AAGTGAATACATTTCTGAATGTATGTT 676971 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334 || || || ||||| | ||||||||||| | | || | | || ||||| || Sbjct 676972 CTCAATCGCGATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACT 677031 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 || | ||||||| ||| || ||||||||||| || || ||||| |||||||| || Sbjct 677032 GAAACGCTCGACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACAC 677091 Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTCCAATCATTAATATCTTTAG 19453 || | || || || || | || || | ||| ||||| | || ||| || | Sbjct 677092 ATATGAGATGAAGTGACGCTC-GCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGG 677150 Query 19454 ATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATA 19513 | | ||| || |||||||| |||||||| || || ||||||| ||||| | | ||| | Sbjct 677151 AGAGATCAACCTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAA 677210 Query 19514 TATCACGATATTGTATAGGAAATATAACAAATCTAT 19549 ||| | ||||| || || |||| |||||||| || Sbjct 677211 CATCGTGGTATTGGATGGGGAATAGAACAAATCGAT 677246 >seq46 Length=2247445 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || ||||| || || | || || || | |||||| ||| || || |||||||| ||| Sbjct 184799 CCGATACCTCCAGCATTCTTGGAGATGATAGCACATTCTTTGAGTGTGTCATAAATACCT 184858 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 || ||||| || ||| |||| | | || ||||| || ||||||||||| | ||| Sbjct 184859 TCGATACTGTCGTCTTTCATTGTGATCAGGAAACAGCTGGACATTTGCGGTCTAGTAGTA 184918 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 || |||||| | || || || ||||| ||||||| ||||| || Sbjct 184919 CCACTATTAAACAGGGTCGGTGAAGCATGGGTAAACCACTTCTCCGA 184965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561812175186240