Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq121 145 6e-29 seq233 132 4e-25 seq168 118 9e-21 >seq121 Length=1419867 Score = 145 bits (160), Expect = 6e-29 Identities = 365/543 (67%), Gaps = 14/543 (3%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || ||| || || || || | || |||| || Sbjct 1341027 GCTATTGGAATCGATTTGGGCACGACCTATTCCTGCGTCGGAGTGTTCCAGCATGGAAAG 1341086 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| |||||||| ||| | || ||||| |||||| | || || Sbjct 1341087 GTGGAGATCATTGCCAACGATCAAGGAAACCGGACAACTCCGAGTTATGTGGCGTTTACC 1341146 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCA 550169 || || |||| | | ||||||||||| || | || | || || ||||| |||| Sbjct 1341147 GACACCGAACGCCTCATCGGTGATGCAGCTAAGAACCAGGTTGCAATG--AATCCAACCA 1341204 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 |||| |||| ||||| || || || || || | | || ||||| | | ||||| Sbjct 1341205 ATACCGTTTTCGATGCCAAGCGATTGATCGGTCGCCGATTCGATGATGCTTCGGTTCAAT 1341264 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 | || ||||| || ||||| ||| | ||||| ||| || || || | ||| ||| Sbjct 1341265 CCGACATGAAACACTGGCCATTCAATGTTGTTGATGACAAGGGCAAGCCGAAGATTCAAG 1341324 Query 550290 -CTACTCATGAAG-GATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | || | || | ||| | ||| || || ||| | || || | ||||||| Sbjct 1341325 TGGAATACAGAGGCGA---GACAAAGACATTCTCGCCCGAAGAGATATCGGCCATGGTTT 1341381 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTA 550405 | ||||||||| | | ||| || | |||| || | || | ||||||||| Sbjct 1341382 TGGGGAAAATGAAGGAGATCGCCGAAGC-CTACTTGGGCACCACTGTGAAGGATGCAGTC 1341440 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | ||||| || || || || |||||| |||||||||||||| || ||||| || ||| Sbjct 1341441 GTCACTGTGCCTGCCTACTTCAATGACAGTCAACGTCAAGCTACGAAGGATGCGGGTCGT 1341500 Query 550466 ATTGCTGGACTT-AATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 || || |||| || |||| | || ||||| || || || |||||||| | || || Sbjct 1341501 ATCGC-CAACTTAAACGTTCAGAGAATCATCAACGAGCCCACAGCTGCTGCGATCGCTTA 1341559 Query 550525 TGG 550527 ||| Sbjct 1341560 TGG 1341562 Score = 107 bits (118), Expect = 2e-17 Identities = 364/554 (66%), Gaps = 16/554 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || || || ||| | || ||||| | ||||| ||||| | ||||| || Sbjct 1389724 AGCGATTGGAATCGATCTGGGGACCACGTTCTCATGTGTGGGTGTATTCCAAAACAACAA 1389665 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||| ||||| ||||| ||| | || ||||| |||||| | || || Sbjct 1389664 GGTGGAAATCATTGCAAATGACCAAGGGAACCGCACAACTCCGAGTTATGTGGCCTTTAC 1389605 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || |||| ||| |||||||||| || || | || | || ||||| | || Sbjct 1389604 TGAGACCGAACGTTTGATTGGTGATGCGGCCAAGAACCAGGTTGCTATGAATCCAGCTAA 1389545 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | || ||||| ||||| ||||| || | || | |||| | |||||||| | Sbjct 1389544 CACGGTCTTCGATGCCAAACGCTTAATCGGTCGTAGGTACGATGACCCTACTGTTCAAGA 1389485 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTG-TTAATGTTTCTGGAAAACCTTATATTGAAG 550289 ||| || ||||| ||| | |||| || | | || ||||| | || | | Sbjct 1389484 GGATCGTAAAATGTGGCCATTC-ACATTGATTGAAGAAAACGGCAAACCGAAGATCCAGG 1389426 Query 550290 -CTACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGGT 550344 | | | | |||| || ||| || || | | ||| | || || || ||||| Sbjct 1389425 TCGAAT-ACAAAGG-TCA---AAAGAAAACGTTCTTTGCTGAAGAGATATCCTCGATGGT 1389371 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACG-GATGCAG 550403 || | || ||||| || || || | | |||| |||| | | | || |||| Sbjct 1389370 GTTGACAAAGATGAAGGAAGTCGCGGAAGCCTAT-TTGGGGAAGACGGTCAGTGAGGCAG 1389312 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG-A 550462 | || ||||| || || || || ||||| ||| | || || || || ||||| || | Sbjct 1389311 TCATCACTGTGCCGGCCTACTTCAATGATAGTCAAAGGCAGGCCACGAAGGATGCAGGGA 1389252 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 || ||||| || || || ||||| || |||||||||||||| || || || || |||| Sbjct 1389251 CG-ATTGCCGGTCTAAACGTTCTACGGATTATCAATGAACCAACAGCAGCAGCTATTGCT 1389193 Query 550523 TATGGACTTGATAA 550536 ||||| || ||||| Sbjct 1389192 TATGGCCTGGATAA 1389179 >seq233 Length=855571 Score = 132 bits (146), Expect = 4e-25 Identities = 208/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 552292 TTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGA 552351 |||||||| | |||||| ||| || | ||||| | ||||| || || ||| |||||| Sbjct 106520 TTGTACTTCTTGATGTTTGTCCGCTGACCCTTGGAATCGAAACCGTCGGTGGTGTTATGA 106579 Query 552352 CTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGT 552411 |||| || ||| |||| || ||||| ||||| || | |||||||| || Sbjct 106580 CTAAGCTGATCTCGCGAAACACAGTAATTCCAACGAAAAAGTCGCAGGTATTTTCCACTG 106639 Query 552412 ATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTA 552471 | | || || ||| | | ||||| |||||| | |||||||||||||| | || | Sbjct 106640 CTGCTGACAACCAACCCACGGTTACCATTCAAGTGTTTGAAGGAGAAAGGCCGATGACGA 106699 Query 552472 AAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAG 552531 |||| ||| || | || | | ||| || | ||| || ||||| |||||||| || | Sbjct 106700 AAGACAATCATTACCTCGCAAAGTTTGATCTTACAGGAATCCCTCCAGCTCCTCGCGGTG 106759 Query 552532 TACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 |||| || || ||||| || ||||| ||||||| || || || || | || ||||| Sbjct 106760 TACCTCAGATAGAAGTCACCTTCGAAATCGATGTGAACGGTATCCTGCAGGTTACTGC 106817 >seq168 Length=1129759 Score = 118 bits (130), Expect = 9e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| || |||||| || |||||||||| ||||||| Sbjct 775040 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 775099 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||||||| ||||||||||| | | |||||| || || || || ||||| Sbjct 775100 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 775159 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || ||||| || || || || |||||| ||||| | || | | ||| || || Sbjct 775160 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGT 775218 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||||||||| || ||||| || ||||| Sbjct 775219 GATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Score = 113 bits (124), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| || |||||| || |||||||||| ||||||| Sbjct 774128 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774187 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||||||| ||||||||||| | | |||||| || || || || ||||| Sbjct 774188 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774247 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || ||||| || || || || |||||| ||||| | || | | ||| || || Sbjct 774248 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGT 774306 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || || || || ||||| || ||||| Sbjct 774307 AATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 113 bits (124), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| || |||||| || |||||||||| ||||||| Sbjct 774356 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774415 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||||||| ||||||||||| | | |||||| || || || || ||||| Sbjct 774416 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774475 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || ||||| || || || || |||||| ||||| | || | | ||| || || Sbjct 774476 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGT 774534 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || || || || ||||| || ||||| Sbjct 774535 AATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 113 bits (124), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| || |||||| || |||||||||| ||||||| Sbjct 774584 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774643 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||||||| ||||||||||| | | |||||| || || || || ||||| Sbjct 774644 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774703 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || ||||| || || || || |||||| ||||| | || | | ||| || || Sbjct 774704 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGT 774762 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || || || || ||||| || ||||| Sbjct 774763 AATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 113 bits (124), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| || |||||| || |||||||||| ||||||| Sbjct 774812 AGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGA 774871 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||||||||| ||||||||||| | | |||||| || || || || ||||| Sbjct 774872 CCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCC 774931 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || ||||| || || || || |||||| ||||| | || | | ||| || || Sbjct 774932 TTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATC-GCTTGCTTCAACTTCAAGGGT 774990 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || || || || ||||| || ||||| Sbjct 774991 AATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 91.5 bits (100), Expect = 1e-12 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| |||||||| | || || | | |||||| |||||||| ||||||||||| | | Sbjct 773935 AATGTTGTAATCCGATAAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCG 773994 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||| || || || || ||||| || ||||| || || || || |||||| || Sbjct 773995 TTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGT 774054 Query 563412 ATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||| | || | | ||| || || | || || ||||||||||| || ||||| || | Sbjct 774055 ATC-GCTTGCTTCAACTTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCT 774113 Query 563471 GCAT 563474 |||| Sbjct 774114 GCAT 774117 Score = 86.0 bits (94), Expect = 5e-11 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || | ||| || ||||| |||||||| | |||||| ||||| || || ||||| ||| Sbjct 735689 TCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735748 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCGAGAGTA 563436 |||||||| || || || ||||||||| || || | | || ||||| || Sbjct 735749 TCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCA--AC-CTCGAGGGTG 735805 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| ||||| || ||||| || || ||||||||| Sbjct 735806 ATCGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCATA 735844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027063427525840