Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq276 118 1e-21 >seq276 Length=693516 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 37174 AACATGCA----AAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAG 37229 |||||||| || || || || | ||||||||||||||| |||| ||||||| ||| Sbjct 676615 AACATGCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTGAAG 676674 Query 37230 GTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA 37289 ||||| || ||||| || || | |||||| | |||||||||||| || || ||||| Sbjct 676675 GTTAACCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAG 676734 Query 37290 AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACG 37327 |||||||| || || ||||| ||||| || || | ||| Sbjct 676735 AAGAAAATGCCCTCGACTGCAGCAAAGGCAACTAAACG 676772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 219/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | ||||| || ||||| || | ||||||||| || || || || ||||| || Sbjct 676921 ATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTTCTCAATCGC 676980 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 ||||| | || |||||||||| | | || | | |||||| || | | || | || Sbjct 676981 GATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTC 677040 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | | || || ||||| ||||| || || |||||||| || | |||||| || Sbjct 677041 GACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGAT 677100 Query 37619 AAAATGTCTTTCATCAT--TTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCA 37676 || || | || | |||| | | | ||||| | || ||| || || | |||| Sbjct 677101 GAAGTGACGCTCGCCGACCTTGAGACTATC--CCAATGACCAAAATCCTTGGAGAGATCA 677158 Query 37677 ACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTA 37736 || || |||||||||||||| ||| | ||| ||||| | | ||||| ||| | Sbjct 677159 ACCTCTTCAACGGTCCAAAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGG 677218 Query 37737 TGTTGTATTGGAAATATTACAAATCTAT 37764 | ||| || || |||| ||||||| || Sbjct 677219 TATTGGATGGGGAATAGAACAAATCGAT 677246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592004234424640