Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq666 122 7e-23 seq168 118 8e-22 seq190 116 3e-21 >seq666 Length=114481 Score = 122 bits (134), Expect = 7e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101264 AAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAAT 101323 |||||||| || ||||| ||||| || |||||||| | || ||| | | || ||||| Sbjct 72269 AAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTCCAAC 72210 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 |||||||||||||| ||||||||||| ||||| || |||||||| || ||||||||||| Sbjct 72209 TGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGAATC 72150 Query 101384 TT 101385 || Sbjct 72149 TT 72148 >seq168 Length=1129759 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || |||||||| || || |||||||| | | ||||| |||| || | ||| Sbjct 774142 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774201 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| ||||| || || || ||||| || |||||||| || ||||| || || Sbjct 774202 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774261 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||| || | ||| |||||||| || | ||| || ||||| Sbjct 774262 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 774321 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 774322 CAGGGTCTTCACGAATATCTGCATG 774346 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || |||||||| || || |||||||| | | ||||| |||| || | ||| Sbjct 774370 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774429 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| ||||| || || || ||||| || |||||||| || ||||| || || Sbjct 774430 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774489 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||| || | ||| |||||||| || | ||| || ||||| Sbjct 774490 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 774549 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 774550 CAGGGTCTTCACGAATATCTGCATG 774574 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || |||||||| || || |||||||| | | ||||| |||| || | ||| Sbjct 774598 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774657 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| ||||| || || || ||||| || |||||||| || ||||| || || Sbjct 774658 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774717 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||| || | ||| |||||||| || | ||| || ||||| Sbjct 774718 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 774777 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 774778 CAGGGTCTTCACGAATATCTGCATG 774802 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || |||||||| || || |||||||| | | ||||| |||| || | ||| Sbjct 774826 ATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCTTCAAGTTG 774885 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| ||||| || || || ||||| || |||||||| || ||||| || || Sbjct 774886 TTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTT 774945 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||| || | ||| |||||||| || | ||| || ||||| Sbjct 774946 CGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGT 775005 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 775006 CAGGGTCTTCACGAATATCTGCATG 775030 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATA--GTTCTGG 101312 || ||||| || || || || || || || || || |||||||| ||||| || | Sbjct 773903 CGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATC--CGATAAGGTACGTC 773960 Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| || | ||| || || ||||| ||||| || || || ||||| || |||||||| | Sbjct 773961 CATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCT 774020 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | ||||| || || || ||| | || | ||| || | ||| |||||||| |||| Sbjct 774021 TGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGA 774080 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| || || || | ||| || || |||||||||||| Sbjct 774081 TCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| ||||| || || ||||| || | | || | | | || ||||| || Sbjct 735869 TGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTCCAACTGT 735928 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | || || || || || || |||||||| ||||||||||| || Sbjct 735929 TTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTC 735988 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | || || |||||||||| ||| |||||||| Sbjct 735989 GCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCTTGCCGGTC 736048 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || |||||||| || Sbjct 736049 AGCGTCTTCACGAAGATCTGCATTGT 736074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || ||||| || || | ||||| ||||| || || ||||| || | | || | | Sbjct 735629 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 735688 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || ||||||||||| || || || || | || || || || || || |||||||| ||| Sbjct 735689 TCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735748 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 |||||||| || || || | || | ||||| | || || || || |||| | Sbjct 735749 TCTTGAATCTTCGCCTTCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATC 735808 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || | ||||| ||||| || ||||| Sbjct 735809 GTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 735843 >seq190 Length=1055212 Score = 116 bits (128), Expect = 3e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| |||||||| || || |||||||| | | ||| | | | || |||| || Sbjct 796607 ATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAAAGAGTACGGCCGTCCTCCAGCTG 796548 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||| ||||||||||| || || || || || || |||||||| || Sbjct 796547 CTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGGATCCCCTCCTTGTCTTGAATCTT 796488 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| |||| | || || |||| ||| || ||||| || | || || || || Sbjct 796487 GGCTTTGACATTTTCGATGGTATCCGACGCTTCAACCTCAAGTGTAATGGTCTTTCCCGT 796428 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGA 101479 | || || || || |||||||| || ||||| Sbjct 796427 GAGTGTCTTGACGAAGATCTGCAT-CTTCCGCGA 796395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396074511791112