Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq190 134 1e-26 seq666 111 1e-19 seq547 86.0 5e-12 >seq190 Length=1055212 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| |||| ||| || ||| ||||| ||||| ||||||||||| Sbjct 796631 GCCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGA 796572 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| |||||| || || || |||| |||||||||||| | || Sbjct 796571 AAGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGG 796512 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| ||| ||| | | | || ||||| || || Sbjct 796511 GATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAAC 796452 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | ||||| || |||||||| | || || || || ||||||||| Sbjct 796451 CTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATC 796403 >seq666 Length=114481 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 || |||||| || ||| || |||||||| ||||||||||| ||| | ||| |||| || Sbjct 72273 CATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCGACCGTCTTC 72214 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 |||||||||||| ||||| |||| ||||| ||||| | |||| ||||||||| || Sbjct 72213 CAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTATCTTG 72154 Query 48677 AATCTT 48682 |||||| Sbjct 72153 AATCTT 72148 >seq547 Length=219830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 9141 ATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCAC 9200 ||||||||| || ||||| || ||||| | || || | ||||| |||||||||||| || Sbjct 89438 ATTGAACAGGACAACTCCAACATTACCACGATAGTCTTGATCGACCACACCAGCACCAAC 89379 Query 9201 GTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCC 9257 |||||| |||||||| || || ||| ||||| || | |||||||| || || Sbjct 89378 ATCGATGCCGTGCTTGAGAGCCAGGCCACTACGGGGAGCTACCCGACCGTAACAACC 89322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380741604747768