Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq168 104 4e-17 >seq168 Length=1129759 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||||||| | || | ||||| || || || || Sbjct 774116 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774175 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| | ||| || | |||||| ||||||||||| || | || || || || Sbjct 774176 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774235 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| |||||||||| | ||| Sbjct 774236 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774295 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || ||||| || || || || || ||||| ||||| Sbjct 774296 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||||||| | || | ||||| || || || || Sbjct 774344 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774403 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| | ||| || | |||||| ||||||||||| || | || || || || Sbjct 774404 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774463 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| |||||||||| | ||| Sbjct 774464 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774523 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || ||||| || || || || || ||||| ||||| Sbjct 774524 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||||||| | || | ||||| || || || || Sbjct 774572 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774631 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| | ||| || | |||||| ||||||||||| || | || || || || Sbjct 774632 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774691 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| |||||||||| | ||| Sbjct 774692 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774751 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || ||||| || || || || || ||||| ||||| Sbjct 774752 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||||||| | || | ||||| || || || || Sbjct 774800 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774859 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| | ||| || | |||||| ||||||||||| || | || || || || Sbjct 774860 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774919 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| |||||||||| | ||| Sbjct 774920 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774979 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || ||||| || || || || || ||||| ||||| Sbjct 774980 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||||||| | || | ||||| || || || || Sbjct 775028 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 775087 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| | ||| || | |||||| ||||||||||| || | || || || || Sbjct 775088 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 775147 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| |||||||||| | ||| Sbjct 775148 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 775207 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || || || || || || |||||| Sbjct 775208 ACTTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCATT 775258 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || || || ||||| || | ||| || | |||||| ||||||||||| || | Sbjct 773935 AATGTTGTAATCCGATAAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCG 773994 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || || || || || ||||| || ||||| || || | || | ||| |||||| Sbjct 773995 TTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGT 774054 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 |||| | |||||||| || || || || || || || || || || || ||||| || Sbjct 774055 ATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTG 774114 Query 193358 CAT 193360 ||| Sbjct 774115 CAT 774117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899179652373120