Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq276 89.7 8e-13 >seq276 Length=693516 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 ||||| | || || || || ||| | |||||||||||| || | ||| ||||| Sbjct 676612 TATAACATGCAGGCGAAGTCGCAGTGCAGACCTTCATCTCTACTGATCAGTTCATTACTG 676671 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || |||||||| ||||| | || | |||||| ||||||||||| | ||||| || | | Sbjct 676672 AAGGTTAACCCAGGCATCAAGCCGCGTTTTTTCAGCCAAAATATTGCGGCGAAGCTGCCA 676731 Query 18269 GAAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA 18318 || ||||| || ||||| || ||| || || || | ||| | || ||||| Sbjct 676732 GAGAAGAAAATGCCCTCGACTGCA-GCAAAGGCAACTAAACGCTCCGCAAA 676781 Score = 89.7 bits (98), Expect = 8e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 18412 TTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCT 18471 |||| | | |||||| ||||| ||||| || | | ||||||||||| ||||||||| | Sbjct 676912 TTCTGTTGGATCTTTGATATACGTGTCAATCAGAAGTGAATACATTTCTGAATGTATGTT 676971 Query 18472 TTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATA 18531 || || || ||||| | | ||||| | | | |||| ||| ||||| || | Sbjct 676972 CTCAATCGCGATCTGCATCCCGTAAAAACACCGAACCTCCGGAACTTGAACTTCCTGACT 677031 Query 18532 AAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAAC 18591 || | || |||| |||||| ||||| || || | || || ||||| || || Sbjct 677032 GAAACGCTCGACCAGATTCTCTAGCACTATTCCATCGCTTGCAGCAAAGAATGCTAACAC 677091 Query 18592 ATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGA 18651 |||| ||||| || || |||||||| | | ||| | | | | ||| || || Sbjct 677092 ATATGAGATGAAGTGACGCTCGCCGACCTTGAGACTATCCCAATGACCAAAATCCTTGGA 677151 Query 18652 TAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 |||||||| ||||| |||||||| |||| Sbjct 677152 GAGATCAACCTCTTCAACGGTCCAAAACGATG 677183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731485791145600