Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq168 98.7 2e-15 >seq168 Length=1129759 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||| || || || || |||| ||| | ||| || || || ||||| ||| Sbjct 773891 CCACCACGAAGGCGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGAT 773950 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| |||| || | |||||| || ||||| || || | || || || ||||| Sbjct 773951 AAGGTACGTCCATCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774010 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || ||||| || || || ||||| |||| ||| | ||| ||| Sbjct 774011 ATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACT 774070 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || ||||| | || || | ||||||||||| Sbjct 774071 TCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||| | ||||| ||| || |||||| Sbjct 774116 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774175 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || | |||||| || ||||| || || | || || || ||| Sbjct 774176 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774235 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| |||| ||| | ||| Sbjct 774236 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774295 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| || ||||| || | || || | ||||||||||| Sbjct 774296 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||| | ||||| ||| || |||||| Sbjct 774344 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774403 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || | |||||| || ||||| || || | || || || ||| Sbjct 774404 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774463 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| |||| ||| | ||| Sbjct 774464 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774523 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| || ||||| || | || || | ||||||||||| Sbjct 774524 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||| | ||||| ||| || |||||| Sbjct 774572 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774631 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || | |||||| || ||||| || || | || || || ||| Sbjct 774632 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774691 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| |||| ||| | ||| Sbjct 774692 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774751 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| || ||||| || | || || | ||||||||||| Sbjct 774752 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | ||| | ||||| ||| || |||||| Sbjct 774800 ATGCCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCA 774859 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || | |||||| || ||||| || || | || || || ||| Sbjct 774860 GACAGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGT 774919 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| |||| ||| | ||| Sbjct 774920 GGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCA 774979 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || ||||| || ||||| || | || || | ||||||||||| Sbjct 774980 ACTTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983947502151600