Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq129 93.3 1e-13 >seq129 Length=1394800 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 ||||||||||||||||||| ||||| ||||||||||||||||| || || | | || | Sbjct 342809 CGATAGTCATACGACTGGGGATAGCGTGGGGATTGATGATGATATCTGGAGTAATGCCTT 342750 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCG 251961 || |||||| ||||||| ||| | || || | | ||| ||| ||||||||||| Sbjct 342749 CACAAGTGAACGGCATAT-CTTCTTGTCGGTACCGAATACCACAAGTACCCTTTTGTCCA 342691 Query 251962 TGACGAGAACTGAACTTATCACC 251984 || ||| |||||| ||||| Sbjct 342690 TGCCGACTGGCGAACTTGTCACC 342668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471021504898792