Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq352 114 2e-19 seq51 114 2e-19 seq92 113 6e-19 seq1455 111 2e-18 seq276 102 1e-15 seq111 100 3e-15 seq23602 95.1 1e-13 >seq352 Length=526801 Score = 114 bits (126), Expect = 2e-19 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| | ||| || ||||| ||||||||||| | | |||||| Sbjct 522309 GCAAGCTCACCGGGCAAAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTA 522368 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| ||||||| ||||||| | ||||| | || || |||| |||||| Sbjct 522369 GACCGCTTGTTGTAGTGCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCG 522428 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||| ||||||| ||||||| ||| ||||| || ||||||||| ||| Sbjct 522429 TTCACGAACGAATTCATGATTGACATCGCCTTCGACGAGATACCAGTGTCGGGGTGGACC 522488 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || | ||||||||||||| Sbjct 522489 TGACGCAACACCTTGTAGATG 522509 >seq51 Length=2144829 Score = 114 bits (126), Expect = 2e-19 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| | ||| || ||||| ||||||||||| | | |||||| Sbjct 2122803 GCAAGCTCACCGGGCAAAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTA 2122744 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| ||||||| ||||||| | ||||| | || || |||| |||||| Sbjct 2122743 GACCGCTTGTTGTAGTGCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCG 2122684 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||| ||||||| ||||||| ||| ||||| || ||||||||| ||| Sbjct 2122683 TTCACGAACGAATTCATGATTGACATCGCCTTCGACGAGATACCAGTGTCGGGGTGGACC 2122624 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || | ||||||||||||| Sbjct 2122623 TGACGCAACACCTTGTAGATG 2122603 Score = 114 bits (126), Expect = 2e-19 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| | ||| || ||||| ||||||||||| | | |||||| Sbjct 2135542 GCAAGCTCACCGGGCAAAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTA 2135483 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| ||||||| ||||||| | ||||| | || || |||| |||||| Sbjct 2135482 GACCGCTTGTTGTAGTGCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCG 2135423 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||||||||||| ||||||| ||| ||||| || ||| ||||| ||| Sbjct 2135422 TTCACGAACGAGTTCATGATTGACATCGCCTTCGACGAGATACCAGTGTCAGGGTGGACC 2135363 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || | ||||||||||||| Sbjct 2135362 TGACGCAACACCTTGTAGATG 2135342 >seq92 Length=1581441 Score = 113 bits (124), Expect = 6e-19 Identities = 129/168 (77%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 1592132 TGGGAC-AAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190 |||||| ||| | |||||||| || || || || || |||||| |||| |||||||| Sbjct 1441832 TGGGACCAAGAATTTTTGCGA-GTTGACCAAGGGACTCTGTTTGAGCTGATGCTCGCCGC 1441890 Query 1592191 CAACTACCTCGACATCAA-GCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||| | |||||||| | || | || ||| || | ||||| | ||||| ||||||| Sbjct 1441891 AAACTACTTGGACATCAAAGGCT-TACTAGATGTTTGTTGCAAAACCGTGGCTAACATGA 1441949 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 |||| || || | || || || |||||||| |||||||| ||||||| Sbjct 1441950 TCAAAGGAAAAACTCCGGAAGAAATCCGCAAAACCTTTAATATCAAGT 1441997 >seq1455 Length=5280 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || | | | || || || || |||||||| || | || || Sbjct 3176 GCTTGGCCAATTCACCAGGAAGCAGAAGACGGACAGCAGTCTGGATTTCTCTGCTGGTGA 3235 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || |||| || || |||| || ||| | | | ||||| || | | Sbjct 3236 TGGTCGAGCGCTTATTGTAGTGAGCGAGGCGGCTGGACTCAGCGGCAATGCGCTCAAAGA 3295 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || || ||||||| ||||| | |||| |||||| || |||||||| Sbjct 3296 TGTCGTTGACGAAGGAATTCATGATTGACATGGCCTTGGAGGAGATACCGGTGTCGGGGT 3355 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||| |||||||||||| Sbjct 3356 GCACCTGACGGAGGACCTTGTAGATG 3381 >seq276 Length=693516 Score = 102 bits (112), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || | |||||||| ||| || || |||| | || ||||| | |||||| || Sbjct 676641 ACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAACCCAGGCATCAAGCCGCGTTT 676700 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || |||||||| || ||| ||| ||||| ||||| || ||||||||||| || ||||| Sbjct 676701 TTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATGCCCTCGACTGCAGCAAA 676760 Query 869299 GCCGATGAGCCGCTCGGCAAAGGT 869322 | | | | ||||| ||||| || Sbjct 676761 GGCAACTAAACGCTCCGCAAACGT 676784 >seq111 Length=1475026 Score = 100 bits (110), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| ||| || | | | || || || || |||||||| || | || ||| | Sbjct 127502 TGGCCAATTCACCAGGAAGCAGAAGACGGACAGCAGTCTGGATTTCTCTGCTGGTGATGG 127443 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||| || |||| || || |||| || ||| | | | || || || | |||| Sbjct 127442 TCGAGCGCTTATTGTAGTGAGCGAGGCGGCTGGACTCAGCGGCAATACGCTCAAAGATGT 127383 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || || ||||||| ||||| | ||| |||||| || ||||||||||| Sbjct 127382 CGTTGACGAAGGAATTCATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGTGCA 127323 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||| |||||||||||| Sbjct 127322 CCTGACGGAGGACCTTGTAGATG 127300 >seq23602 Length=318 Score = 95.1 bits (104), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 || || || ||| ||| | ||| || ||||| ||||||||||| | | |||||| Sbjct 164 GCAAGCTCACCGGGCAAAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTA 223 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| ||||||| ||||||| | ||||| | || || |||| |||||| Sbjct 224 GACCGCTTGTTGTAGTGCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCG 283 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTT 1254499 || || ||||||||||||| ||||||| ||| Sbjct 284 TTCACGAACGAGTTCATGATTGACATCGCCTT 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103674757342472