Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq168 136 4e-27 seq190 116 3e-21 seq666 96.9 3e-15 >seq168 Length=1129759 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || || || || ||||| ||||| | | Sbjct 774117 ATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 774058 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || || ||||| || Sbjct 774057 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 773998 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| ||||| || || ||| | | | | || ||||| ||| Sbjct 773997 CAACGCTTGATTTTTGCCGGCAAACAACTCGAAGATGGACGTACCTTATCGGATTACAAC 773938 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || ||||||||||| ||||| | || || ||| Sbjct 773937 ATTCAGAAGGAGTCCACTCTACACTTGGTTTTGCGCCTTCGTGGTGGC 773890 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || |||||||| || ||||| || ||||| ||||| | | Sbjct 774345 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774286 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || || ||||| || Sbjct 774285 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774226 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| ||||| || || ||| ||| |||| ||||| ||| Sbjct 774225 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774166 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || ||||| | || |||| || ||| Sbjct 774165 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774118 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || |||||||| || ||||| || ||||| ||||| | | Sbjct 774573 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774514 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || || ||||| || Sbjct 774513 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774454 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| ||||| || || ||| ||| |||| ||||| ||| Sbjct 774453 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774394 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || ||||| | || |||| || ||| Sbjct 774393 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774346 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || |||||||| || ||||| || ||||| ||||| | | Sbjct 774801 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774742 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || || ||||| || Sbjct 774741 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774682 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| ||||| || || ||| ||| |||| ||||| ||| Sbjct 774681 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774622 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || ||||| | || |||| || ||| Sbjct 774621 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774574 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || |||||||| || ||||| || ||||| ||||| | | Sbjct 775029 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774970 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || || ||||| || Sbjct 774969 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774910 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| ||||| || || ||| ||| |||| ||||| ||| Sbjct 774909 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774850 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || ||||| | || |||| || ||| Sbjct 774849 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 774802 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || ||||| ||||| | | Sbjct 775257 ATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 775198 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| ||||| || || ||||| || Sbjct 775197 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 775138 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| ||||| || || ||| ||| |||| ||||| ||| Sbjct 775137 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 775078 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || || ||||| | || |||| || ||| Sbjct 775077 ATCCAGAAAGAATCCACTCTTCATCTGGTGCTTCGTCTGCGTGGTGGC 775030 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || || || || || || ||| Sbjct 736074 ACAATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCC 736015 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || ||||| ||||| || ||||| || || || || Sbjct 736014 AGTGACACAATTGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGAC 735955 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | || || ||||| |||||| ||||||| | | |||| || || Sbjct 735954 CAGCAACGCCTTATTTTCGCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTAC 735895 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || || || || || || ||| ||||| Sbjct 735894 AACATCCAGAAAGAGTCTACTCTTCACCTGGTG 735862 >seq190 Length=1055212 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || ||||| || || || ||||| | Sbjct 796403 GATGCAGATCTTCGTCAAGACACTCACGGGAAAGACCATTACACTTGAGGTTGAAGCGTC 796462 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| ||||| |||||||| || || || ||||| ||||| Sbjct 796463 GGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAGGGGATCCCTCCAGATCA 796522 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || ||||| || || || || ||||||||||| | | | || ||||| || Sbjct 796523 ACAGCGATTGATTTTCGCGGGAAAGCAGCTGGAGGACGGCCGTACTCTTTCTGATTACAA 796582 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||| || ||||| || || || |||| ||||| Sbjct 796583 CATTCAGAAAGAATCCACCCTGCATCTGGTCCTGCGA 796619 >seq666 Length=114481 Score = 96.9 bits (106), Expect = 3e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 24775 AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGAT 24834 |||| |||| | || ||| ||||| || || || || ||||| ||||| || |||||||| Sbjct 72136 AACGTTAAAGCCAA-GATTCAAGATAAGGAGGGCATTCCTCCAGATCAGCAGCGTTTGAT 72194 Query 24835 CTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGA 24894 ||||| || || ||| |||| || | | | || ||||| |||||||||||||| Sbjct 72195 TTTTGCAGGTAAGCAGTTGGAAGACGGTCGCACTCTCTCTGATTACAACATTCAAAAGGA 72254 Query 24895 ATCGACACTACACTTGGTGTTGCGATTGCGCGG 24927 ||| || || || ||| || | || |||||||| Sbjct 72255 ATCCACTCTTCATTTGATGATCCGTTTGCGCGG 72287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449660189036480