Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 4e-13 >seq13 Length=3949831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| || |||| | |||| || || ||||| |||||||||||| | ||| Sbjct 921048 GTTTCCGGATTTCCACAACCTTGACATAAGACGAACTTCTTGATGAAACCATCTAACAGC 920989 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | |||| || ||||| | |||||| ||||| | || |||||||| | ||| Sbjct 920988 TCCTGAAGCTTAGTGGCTTCGTGTGCGCCGTTTACGATATACCGCTCGTTTTTATCATCC 920929 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAA 34472 || || | || || |||| |||||| ||||| Sbjct 920928 ACATGAATCTGAGCCCCCAACTCGCAGCCGAA 920897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| || |||| | |||| || || ||||| |||||||||||| | ||| Sbjct 923439 GTTTCCGGATTTCCACAACCTTGACATAAGACGAACTTCTTGATGAAACCATCTAACAGC 923380 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | |||| || ||||| | |||||| ||||| | || |||||||| | ||| Sbjct 923379 TCCTGAAGCTTAGTGGCTTCGTGTGCGCCGTTTACGATATACCGCTCGTTTTTATCATCC 923320 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAA 34472 || || | || || |||| |||||| ||||| Sbjct 923319 ACATGAATCTGAGCCCCCAACTCGCAGCCGAA 923288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412629189900488