Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1455 149 1e-29 seq111 136 6e-26 seq352 129 9e-24 seq51 129 9e-24 seq23602 116 6e-20 seq276 98.7 2e-14 >seq1455 Length=5280 Score = 149 bits (164), Expect = 1e-29 Identities = 180/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||| || || ||||| || ||||||||| |||||| ||| || | | Sbjct 3137 TGTACTTGGTCACGGCTTTCGTGCCCTCGGAAACGGCGTGCTTGGCCAATTCACCAGGAA 3196 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || || || || |||||||| || | | || ||| || |||||| || ||| Sbjct 3197 GCAGAAGACGGACAGCAGTCTGGATTTCTCTGCTGGTGATGGTCGAGCGCTTATTGTAGT 3256 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||||||| || ||| | | | ||||| || | ||||||||||| || || || Sbjct 3257 GAGCG--AGGCGGCTGGACTCAGCGGCAATGCGCTCAAAGATGTCGTTGACGAAGGAATT 3314 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | ||| |||||| || ||||||||||||||| ||| ||||| Sbjct 3315 CATGATTGACATGGCCTTGGAGGAGATACCGGTGTCGGGGTGCACCTGACGGAGGACCTT 3374 Query 1485708 GTA 1485710 ||| Sbjct 3375 GTA 3377 >seq111 Length=1475026 Score = 136 bits (150), Expect = 6e-26 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||| || || ||||| || |||||||| |||||| ||| || | | Sbjct 127544 TGTACTTGGTCACGGCTTTCGTGCCCTCGGAAACGGCGTGTTTGGCCAATTCACCAGGAA 127485 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || || || || |||||||| || | | || ||| || |||||| || ||| Sbjct 127484 GCAGAAGACGGACAGCAGTCTGGATTTCTCTGCTGGTGATGGTCGAGCGCTTATTGTAGT 127425 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| ||||||| || ||| | | | || || || | ||||||||||| || || || Sbjct 127424 GAGCG--AGGCGGCTGGACTCAGCGGCAATACGCTCAAAGATGTCGTTGACGAAGGAATT 127367 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || |||||| || ||||||||||||||| ||| ||||| Sbjct 127366 CATGATTGACATGGCCTTCGAGGAGATACCGGTGTCGGGGTGCACCTGACGGAGGACCTT 127307 Query 1485708 GTA 1485710 ||| Sbjct 127306 GTA 127304 >seq352 Length=526801 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || || || ||| ||| Sbjct 522265 TGTACTTCGTCACTGCCTTCGTCCCCTCAGAAACCGCATGCTTTGCAAGCTCACCGGGCA 522324 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| ||||||||||| | | | |||||| |||||||| | Sbjct 522325 AAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTAGACCGCTTGTTGTAGT 522384 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || |||| | ||||| | || || |||| |||||||| || ||||| |||| Sbjct 522385 GCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCGTTCACGAACGAATTCA 522444 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||||| || ||||| || ||||||||| ||||| | |||||||| Sbjct 522445 TGATTGACATCGCCTTCGACGAGATACCAGTGTCGGGGTGGACCTGACGCAACACCTTGT 522504 Query 1485710 A 1485710 | Sbjct 522505 A 522505 >seq51 Length=2144829 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || || || ||| ||| Sbjct 2122847 TGTACTTCGTCACTGCCTTCGTCCCCTCAGAAACCGCATGCTTTGCAAGCTCACCGGGCA 2122788 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| ||||||||||| | | | |||||| |||||||| | Sbjct 2122787 AAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTAGACCGCTTGTTGTAGT 2122728 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || |||| | ||||| | || || |||| |||||||| || ||||| |||| Sbjct 2122727 GCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCGTTCACGAACGAATTCA 2122668 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||||| || ||||| || ||||||||| ||||| | |||||||| Sbjct 2122667 TGATTGACATCGCCTTCGACGAGATACCAGTGTCGGGGTGGACCTGACGCAACACCTTGT 2122608 Query 1485710 A 1485710 | Sbjct 2122607 A 2122607 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || || || ||| ||| Sbjct 2135586 TGTACTTCGTCACTGCCTTCGTCCCCTCAGAAACCGCATGCTTTGCAAGCTCACCGGGCA 2135527 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| ||||||||||| | | | |||||| |||||||| | Sbjct 2135526 AAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTAGACCGCTTGTTGTAGT 2135467 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || |||| | ||||| | || || |||| |||||||| || |||||||||| Sbjct 2135466 GCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCGTTCACGAACGAGTTCA 2135407 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||||| || ||||| || ||| ||||| ||||| | |||||||| Sbjct 2135406 TGATTGACATCGCCTTCGACGAGATACCAGTGTCAGGGTGGACCTGACGCAACACCTTGT 2135347 Query 1485710 A 1485710 | Sbjct 2135346 A 2135346 >seq23602 Length=318 Score = 116 bits (128), Expect = 6e-20 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || || || ||| | || || || ||| ||| Sbjct 120 TGTACTTCGTCACTGCCTTCGTCCCCTCAGAAACCGCATGCTTTGCAAGCTCACCGGGCA 179 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||| ||||||||||| | | | |||||| |||||||| | Sbjct 180 AAAGCAGACGAACGGCAGTCTGGATCTCTCTGCTAGTGATCGTAGACCGCTTGTTGTAGT 239 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || |||| | ||||| | || || |||| |||||||| || |||||||||| Sbjct 240 GCGCAAGACGGCTAGACTCGGCAGCAATACGCTCGAAAATGTCGTTCACGAACGAGTTCA 299 Query 1485650 TGATCGACATCG 1485661 |||| ||||||| Sbjct 300 TGATTGACATCG 311 >seq276 Length=693516 Score = 98.7 bits (108), Expect = 2e-14 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || | |||||||| ||| || || ||| | || ||||| | |||||| || Sbjct 676641 ACCTTCATCTCTACTGATCAGTTCATTACTGAAGGTTAACCCAGGCATCAAGCCGCGTTT 676700 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || |||||||| || || ||| ||||| ||||| || ||||||||||| || ||||| Sbjct 676701 TTTCAGCCAAAATATTGCGGCGAAGCTGCCAGAGAAGAAAATGCCCTCGACTGCAGCAAA 676760 Query 794460 GCCGACGAGCCGCTCGGCAAAAGT 794483 | | || | ||||| ||||| || Sbjct 676761 GGCAACTAAACGCTCCGCAAACGT 676784 Score = 87.8 bits (96), Expect = 3e-11 Identities = 174/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 |||||||| |||| || ||||| || |||| |||| || || |||| ||||| Sbjct 676996 AAAACACCGAACCTCCGGAACTTGAACTTCCTGACTGAAACGCTCGACCAGATTCTCTAG 677055 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||| || || ||||| || || || || || | || | ||| |||||||||||| | Sbjct 677056 CACTATTCCATCGCTTGCAGCAAAGAATGCTAACACATATGAGATGAAGTGACGCTCGCC 677115 Query 796260 GTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCA 796319 | | |||| |||| || | || | ||| || ||||| || ||||||| Sbjct 677116 GACCTTGAGACTATCCCAATGACCAAAATCCTTGGAGAGATCAACCTCTTCAACGGTCCA 677175 Query 796320 AAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAG 796379 ||| || || | || || || || | || ||| | ||||| |||||||||| || Sbjct 677176 AAACGATGCGACTGCTTTCTTATAAAACTGCCAAACATCGTGGTATTGGATGGGGAATAG 677235 Query 796380 AACAAAGCGATTGGGGTT 796397 |||||| |||| ||||| Sbjct 677236 AACAAATCGATGCGGGTT 677253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7911755691532824