Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq190 131 1e-25 seq168 102 5e-17 >seq190 Length=1055212 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||||||||| || | |||| || ||||||||||| || || || Sbjct 796630 CCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAA 796571 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || ||||| |||||||| ||||| |||| ||| || || ||| | || Sbjct 796570 AGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGG 796511 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||||||| | || || |||||| | | || | || || || || Sbjct 796510 ATCCCCTCCTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGCTTCAACC 796451 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||||||||||||||| ||||| || ||||||||||| Sbjct 796450 TCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 >seq168 Length=1129759 Score = 102 bits (112), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| ||||||||||||||| || ||||||| | | || |||| || Sbjct 773909 ACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCATCTTCG 773968 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 ||||| || ||||| || |||| ||||||||||| | || | || |||||||| | Sbjct 773969 AGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGG 774028 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 || || || || || || || | || | || || || |||| ||| || |||| Sbjct 774029 ATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCT 774086 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || ||||| || || ||||||||| Sbjct 774087 TCCCAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||| ||||| ||||| ||||| || | | || | || Sbjct 735860 AGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCC 735919 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || |||||||| || || ||||||||||| | || | || ||||| || Sbjct 735920 TCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCT 735979 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| |||||||||| |||| || || ||| Sbjct 735980 TGAATCTTCGCCTTCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTC 736039 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 736040 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 736071 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| || ||||| ||||| || || || || | || |||| Sbjct 774134 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774193 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| || |||| ||||||||||| | || | || |||||||| Sbjct 774194 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774253 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | || || || |||| ||| || | Sbjct 774254 TGGATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCG 774311 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| || || ||||||||| Sbjct 774312 TCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774346 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| || ||||| ||||| || || || || | || |||| Sbjct 774362 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774421 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| || |||| ||||||||||| | || | || |||||||| Sbjct 774422 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774481 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | || || || |||| ||| || | Sbjct 774482 TGGATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCG 774539 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| || || ||||||||| Sbjct 774540 TCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774574 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| || ||||| ||||| || || || || | || |||| Sbjct 774590 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774649 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| || |||| ||||||||||| | || | || |||||||| Sbjct 774650 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774709 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | || || || |||| ||| || | Sbjct 774710 TGGATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCG 774767 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| || || ||||||||| Sbjct 774768 TCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 774802 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| || ||||| ||||| || || || || | || |||| Sbjct 774818 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 774877 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| || |||| ||||||||||| | || | || |||||||| Sbjct 774878 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 774937 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | || || || |||| ||| || | Sbjct 774938 TGGATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCG 774995 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| || || ||||||||| Sbjct 774996 TCTTACCGGTCAGGGTCTTCACGAATATCTGCATG 775030 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| || ||||| ||||| || || || || | || |||| Sbjct 775046 AGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCATCT 775105 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| || |||| ||||||||||| | || | || |||||||| Sbjct 775106 TCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCT 775165 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | || || || |||| ||| || | Sbjct 775166 TGGATCTTCGCCTTCAC--ATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCG 775223 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || ||||| || ||||||||||| Sbjct 775224 TCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325525228611704