Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq168 123 2e-23 seq46 96.9 3e-15 >seq168 Length=1129759 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| || || || |||| |||||| | ||||||| Sbjct 735647 GTAGACTCTTTCTGGATGTTGTAGTCAGACAATGT--ACGACCGTCCTCCAATTGCTTGC 735704 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || || |||||||| || |||||||||||||| || ||||| || Sbjct 735705 CGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCCT 735764 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| | | ||| || |||| ||||| |||||||| ||||| | Sbjct 735765 TCACGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGATCGTTTTGCCAGTCAGGG 735824 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| Sbjct 735825 TTTTCACAAAGATTTGCAT 735843 Score = 120 bits (132), Expect = 3e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| || || ||| ||| |||||| | ||| |||| Sbjct 735875 GTAGACTCTTTCTGGATGTTGTAGTCAGACAACGT--ACGGCCGTCCTCCAACTGTTTGC 735932 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || || |||||||| || |||||||||||||| || ||||| || Sbjct 735933 CGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTATCTTGAATCTTCGCCT 735992 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||| ||| || || | |||| || ||||||||||| | Sbjct 735993 TCACGTTCTCAATTGTGTCACTGGCCTCGACCTCAAGAGTGATCGTCTTGCCGGTCAGCG 736052 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 736053 TCTTCACGAAGATCTGCAT 736071 Score = 111 bits (122), Expect = 2e-19 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 || |||| |||||||| ||||| || |||||||| | || | ||| || |||| Sbjct 773912 AAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATC--CGATAAGGTACGTCCATCTTCGA 773969 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || ||||| || |||| | || ||||||||||| ||||||||||||||||| || Sbjct 773970 GTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA 774029 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||||| || ||| | | || || || | ||||| || || | Sbjct 774030 TCTTCGCCTTCACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTCC 774089 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| || ||||| ||||||||| Sbjct 774090 CAGTAAGAGTCTTCACGAATATCTGCATG 774118 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| || || ||| | || || || || ||||| Sbjct 774149 GTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCA-TCTTCAAGTTGTTTGCC 774207 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||||| ||||||||||||||||| |||||| ||| Sbjct 774208 GGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 774267 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | || || || | ||| | || || |||||||| || Sbjct 774268 CACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGT 774327 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 774328 CTTCACGAATATCTGCATG 774346 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| || || ||| | || || || || ||||| Sbjct 774377 GTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCA-TCTTCAAGTTGTTTGCC 774435 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||||| ||||||||||||||||| |||||| ||| Sbjct 774436 GGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 774495 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | || || || | ||| | || || |||||||| || Sbjct 774496 CACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGT 774555 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 774556 CTTCACGAATATCTGCATG 774574 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| || || ||| | || || || || ||||| Sbjct 774605 GTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCA-TCTTCAAGTTGTTTGCC 774663 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||||| ||||||||||||||||| |||||| ||| Sbjct 774664 GGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 774723 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | || || || | ||| | || || |||||||| || Sbjct 774724 CACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGT 774783 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 774784 CTTCACGAATATCTGCATG 774802 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| || || ||| | || || || || ||||| Sbjct 774833 GTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCA-TCTTCAAGTTGTTTGCC 774891 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||||| ||||||||||||||||| |||||| ||| Sbjct 774892 GGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 774951 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | || || || | ||| | || || |||||||| || Sbjct 774952 CACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTAATCGTCTTACCGGTCAGGGT 775011 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 775012 CTTCACGAATATCTGCATG 775030 Score = 109 bits (120), Expect = 5e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| || || ||| | || || || || ||||| Sbjct 775061 GTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTTCGACCA-TCTTCAAGTTGTTTGCC 775119 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||||| ||||||||||||||||| |||||| ||| Sbjct 775120 GGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTT 775179 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| | | || || || | ||||| || || || || ||||| Sbjct 775180 CACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGATCGTCTTCCCAGTAAGAGT 775239 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| |||||||| ||| Sbjct 775240 CTTCACGAAGATCTGCATTGCT 775261 >seq46 Length=2247445 Score = 96.9 bits (106), Expect = 3e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 |||||||| |||||||| |||| || | || || || || ||||||||| || ||| Sbjct 180451 AGGTCATCCATCAGATAGGGATTGACGATTTGGAATTCACCACTGAGCACGCGGCG-AGA 180509 Query 148299 -TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGT 148357 || |||||||| || |||||||||| ||||||||||| |||| || || || |||| Sbjct 180510 GTAGACGTTGCTAGTGAACGGTTCAATAGACTCGTTGTTTCCCAGGATTTGTGCTGTCGA 180569 Query 148358 TGCCGTGGGCAT 148369 ||| || ||||| Sbjct 180570 TGCAGTTGGCAT 180581 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 148820 GGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTC 148879 || |||||| || |||||||| || || || |||||||| | ||| ||||| || ||||| Sbjct 181299 GGAGATAGAAGCGAGATTGCAAACTGCAGTTTCATCCGGCGAGCTATACTCAACAATCTC 181358 Query 148880 GGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCA 148939 | ||||| || || || || |||| | || |||||| ||| |||||||| Sbjct 181359 AGTACACAGGTTACTACACCGAATGGTTCCCAGATGCTGGTGATTGGACTTCCTGTTGCA 181418 Query 148940 CGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||||| |||||||||||| |||| || ||||| | ||| Sbjct 181419 AGCGTCTTTGTACAGCATGAACGGAGTTCCGGTTTCGATCTG 181460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483165698843840