Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq168 125 5e-24 seq666 111 1e-19 seq190 89.7 3e-13 >seq168 Length=1129759 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||| |||||| ||||| || ||||||||||| || Sbjct 775031 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 775090 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||| |||||||||||||| || ||||| || | || Sbjct 775091 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 775150 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| || | || ||||||| ||| || Sbjct 775151 ATGCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTCTCAATAGTATCGCTTGCTTCAAC 775209 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||||| || || || | || || || ||||||||||| Sbjct 775210 TTCAAGGGTGATCGTCTTCCCAGTAAGAGTCTTCACGAAGATCTGCAT 775257 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||| |||||| ||||| || ||||||||||| || Sbjct 774119 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774178 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||| |||||||||||||| || ||||| || | || Sbjct 774179 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774238 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| || | || ||||||| ||| || Sbjct 774239 ATGCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTCTCAATAGTATCGCTTGCTTCAAC 774297 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || ||||| ||||| || | || || || || |||||||| Sbjct 774298 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774345 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||| |||||| ||||| || ||||||||||| || Sbjct 774347 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774406 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||| |||||||||||||| || ||||| || | || Sbjct 774407 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774466 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| || | || ||||||| ||| || Sbjct 774467 ATGCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTCTCAATAGTATCGCTTGCTTCAAC 774525 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || ||||| ||||| || | || || || || |||||||| Sbjct 774526 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774573 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||| |||||| ||||| || ||||||||||| || Sbjct 774575 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774634 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||| |||||||||||||| || ||||| || | || Sbjct 774635 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774694 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| || | || ||||||| ||| || Sbjct 774695 ATGCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTCTCAATAGTATCGCTTGCTTCAAC 774753 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || ||||| ||||| || | || || || || |||||||| Sbjct 774754 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 774801 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||| |||||| ||||| || ||||||||||| || Sbjct 774803 CCACCACGCAGACGAAGCACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAATCAGAC 774862 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | |||||| |||||||||||||| || ||||| || | || Sbjct 774863 AGAGTTCGACCATCTTCAAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGG 774922 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| |||| || | || ||||||| ||| || Sbjct 774923 ATGCCTTCCTTGTCTTGGATCTTCGCCTTC-ACATTCTCAATAGTATCGCTTGCTTCAAC 774981 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || ||||| ||||| || | || || || || |||||||| Sbjct 774982 TTCAAGGGTAATCGTCTTACCGGTCAGGGTCTTCACGAATATCTGCAT 775029 Score = 116 bits (128), Expect = 2e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || ||||| ||||||||| ||| || || ||||||||||| || | || ||| | Sbjct 773903 CGCAAAACCAAGTGTAGAGTGGACTCCTTCTGAATGTTGTAATCCGATAAGGTACGTCCA 773962 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | |||||| |||||||||||||| || ||||| || | || | ||||| ||| Sbjct 773963 TCTTCGAGTTGTTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGTGGGATGCCTTCCTTG 774022 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || || ||| ||| |||| || | || ||||||| ||| || |||| ||||| Sbjct 774023 TCTTGGATCTTCGCCTTC-ACATTCTCAATAGTATCGCTTGCTTCAACTTCAAGGGTGAT 774081 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || | || || || || |||||||| Sbjct 774082 CGTCTTCCCAGTAAGAGTCTTCACGAATATCTGCAT 774117 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || || ||||| || | ||| |||||| || |||||||| || || | ||| || || Sbjct 735629 CGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCG 735688 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||||||| || ||||| ||||| | || ||||| || | || | ||||| || Sbjct 735689 TCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGGGATGCCTTCCTTA 735748 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||| ||| |||| | | ||| |||||||| | || || || | ||||| Sbjct 735749 TCTTGAATCTTCGCCTTCA-CGTTCTCAATTGTGTCGCTAGCCTCAACCTCGAGGGTGAT 735807 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||||| || || | ||||| |||||||| |||||| Sbjct 735808 CGTTTTGCCAGTCAGGGTTTTCACAAAGATTTGCATA 735844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| || ||||| |||||| || |||||||| || || Sbjct 735844 ACCACCACGAAGGCGAAGCACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 735903 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| ||||| ||||| ||||| ||||| | || ||||| || | || Sbjct 735904 CAACGTACGGCCGTCCTCCAACTGTTTGCCGGCGAAAATAAGGCGTTGCTGGTCAGGTGG 735963 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||||| || || ||| ||| |||| | | ||| ||||| || | || | Sbjct 735964 GATGCCTTCCTTATCTTGAATCTTCGCCTTCA-CGTTCTCAATTGTGTCACTGGCCTCGA 736022 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | |||| |||||||| || || || | ||| || || ||||||||||| || Sbjct 736023 CCTCAAGAGTGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTGT 736074 >seq666 Length=114481 Score = 111 bits (122), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33531 CAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCG 33590 |||||| | || |||||| |||||| || ||||| ||||||||||| ||||| ||||| Sbjct 72282 CAAACGGATCATCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGAGTGCG 72223 Query 33591 TTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 |||| ||||| || || || |||||||||||||||||||||||| Sbjct 72222 ACCGTCTTCCAACTGCTTACCTGCAAAAATCAAACGCTGCTGATCT 72177 >seq190 Length=1055212 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | || | |||| ||| || ||| ||||| || ||||||||||| || Sbjct 796630 CCACCCCTGAGTCGCAGGACCAGATGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAA 796571 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||| || ||||| || |||||||| ||||| |||||| | || Sbjct 796570 AGAGTACGGCCGTCCTCCAGCTGCTTTCCCGCGAAAATCAATCGCTGTTGATCTGGAGGG 796511 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || | || |||| || | ||| || | ||| || Sbjct 796510 ATCCCCTCCTTGTCTTGAATCTT-GGCTTTGACATTTTCGATGGTATCCGACGCTTCAAC 796452 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | || || || ||||||||||| Sbjct 796451 CTCAAGTGTAATGGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 796404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328534879326720