Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq168 116 9e-21 seq149 86.0 1e-11 >seq168 Length=1129759 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || ||||||||| | || || || ||||||| | || Sbjct 736056 AAGACGCTGACCGGCAAGACGATCACTCTTGAGGTCGAGGCCAGTGACACAATTGAGAAC 735997 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || ||||| || || ||| ||| | ||||| ||| Sbjct 735996 GTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAGCAACGCCTTATTTTC 735937 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || |||||||| || || | || ||| | || |||||| |||||||||||||| Sbjct 735936 GCCGGCAAACAGTTGGAGGACGGCCGTACGTTGTCTGACTACAACATCCAGAAAGAGTCT 735877 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 735876 ACTCTTCACCTGGT 735863 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||||||||| | || || || | |||||| | || Sbjct 735828 AAAACCCTGACTGGCAAAACGATCACCCTCGAGGTTGAGGCTAGCGACACAATTGAGAAC 735769 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || ||||| || || ||| ||| | ||||| ||| Sbjct 735768 GTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCACCTGACCAGCAACGCCTTATTTTC 735709 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||| || || | || ||| | || |||||| |||||||||||||| Sbjct 735708 GCCGGCAAGCAATTGGAGGACGGTCGTACATTGTCTGACTACAACATCCAGAAAGAGTCT 735649 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | ||| | |||||| | ||||| Sbjct 735648 ACTTTGCACTTGGTTTTGCGCCTTCG 735623 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | |||||| | ||| | ||||||||||||||||| || ||||||| ||| || Sbjct 735623 CGAAGGCGCAAAACCAAGTGCAAAGTAGACTCTTTCTGGATGTTGTAGTCAGACAATGTA 735682 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || || |||| ||||| |||||||| ||||| ||||| || Sbjct 735683 CGACCGTCCTCCAATTGCTTGCCGGCGAAAATAAGGCGTTGCTG 735726 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||||||||||||||||||||||| || ||||||| ||| || | || || ||| Sbjct 735863 ACCAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAACGTACGGCCGTCCTCC 735922 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||| || |||||||| ||||| ||||| || Sbjct 735923 AACTGTTTGCCGGCGAAAATAAGGCGTTGCTG 735954 >seq149 Length=1267232 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 101527 AGCGGCAGCTTCAGCCACCTTCCGGAGGTAATTGTGCCTCTTCTCCTTTCTTAATCTCTC 101586 || ||||| |||||| ||||||| | ||||||||||| ||||||| |||| | ||| | Sbjct 254767 AGTGGCAGTTTCAGCAACCTTCCTCACGTAATTGTGCCGCTTCTCCATTCTGAGTCTTGC 254708 Query 101587 GAAACGAAGGGCAGATTGTCCTCCCCTCCCGTGTTTCTTTGG 101628 ||| || | ||| ||||| || || | ||||||||||| || Sbjct 254707 GAATCGCAAGGCGGATTGACCACCGCGACCGTGTTTCTTCGG 254666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181181561992936