Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq168 102 7e-17 >seq168 Length=1129759 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | ||||| || |||| || | ||||| ||||| | Sbjct 774346 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774287 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| ||| | || || || || || || || || || || ||||| || Sbjct 774286 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774227 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | |||| | |||||||||||| ||||||| | ||| | | |||||||| Sbjct 774226 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774167 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || ||||||||||| ||||| | ||| Sbjct 774166 CATCCAGAAAGAATCCACTCTTCATCTGGTG 774136 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | ||||| || |||| || | ||||| ||||| | Sbjct 774574 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774515 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| ||| | || || || || || || || || || || ||||| || Sbjct 774514 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774455 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | |||| | |||||||||||| ||||||| | ||| | | |||||||| Sbjct 774454 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774395 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || ||||||||||| ||||| | ||| Sbjct 774394 CATCCAGAAAGAATCCACTCTTCATCTGGTG 774364 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | ||||| || |||| || | ||||| ||||| | Sbjct 774802 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774743 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| ||| | || || || || || || || || || || ||||| || Sbjct 774742 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774683 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | |||| | |||||||||||| ||||||| | ||| | | |||||||| Sbjct 774682 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774623 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || ||||||||||| ||||| | ||| Sbjct 774622 CATCCAGAAAGAATCCACTCTTCATCTGGTG 774592 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | ||||| || |||| || | ||||| ||||| | Sbjct 775030 CATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAG 774971 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| ||| | || || || || || || || || || || ||||| || Sbjct 774970 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 774911 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | |||| | |||||||||||| ||||||| | ||| | | |||||||| Sbjct 774910 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 774851 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || ||||||||||| ||||| | ||| Sbjct 774850 CATCCAGAAAGAATCCACTCTTCATCTGGTG 774820 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || || ||||||| | ||||| ||||| | | Sbjct 775257 ATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAGC 775198 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| ||| | || || || || || || || || || || ||||| ||| Sbjct 775197 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 775138 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | |||||||||||| ||||||| | ||| | | |||||||| Sbjct 775137 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 775078 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || ||||||||||| ||||| | ||| Sbjct 775077 ATCCAGAAAGAATCCACTCTTCATCTGGTG 775048 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | || || || ||||||| | ||||| ||||| | Sbjct 774118 CATGCAGATATTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 774059 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| ||| | || || || || || || || || || || ||||| || Sbjct 774058 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 773999 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | |||| | |||||||||||||||||||| | | | |||||||| Sbjct 773998 GCAACGCTTGATTTTTGCCGGCAAACAACTCGAAGATGGACGTACCTTATCGGATTACAA 773939 Query 25354 TATTCAAAAAGAATCCAC 25371 ||||| || || ||||| Sbjct 773938 CATTCAGAAGGAGTCCAC 773921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444859523685120