Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Opisthorchis_20viverrini_20[refseq_20GCF_5F000715545.1_202014-07-09] 42,216 sequences; 620,452,578 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq168 84.2 2e-11 >seq168 Length=1129759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || || |||| || ||||| |||||| | ||| ||| | || Sbjct 774345 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774286 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | ||||| || || ||||| |||||| | || || || Sbjct 774285 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774226 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||||||| | |||||| | |||| || ||||||||| Sbjct 774225 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774166 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || |||||||| || || ||| Sbjct 774165 ATCCAGAAAGAATCCACTCTTCAT 774142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || || |||| || ||||| |||||| | ||| ||| | || Sbjct 774573 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774514 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | ||||| || || ||||| |||||| | || || || Sbjct 774513 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774454 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||||||| | |||||| | |||| || ||||||||| Sbjct 774453 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774394 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || |||||||| || || ||| Sbjct 774393 ATCCAGAAAGAATCCACTCTTCAT 774370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || || |||| || ||||| |||||| | ||| ||| | || Sbjct 774801 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774742 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | ||||| || || ||||| |||||| | || || || Sbjct 774741 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774682 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||||||| | |||||| | |||| || ||||||||| Sbjct 774681 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774622 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || |||||||| || || ||| Sbjct 774621 ATCCAGAAAGAATCCACTCTTCAT 774598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || || |||| || ||||| |||||| | ||| ||| | || Sbjct 775029 ATGCAGATATTCGTGAAGACCCTGACCGGTAAGACGATTACCCTTGAAGTTGAAGCAAGC 774970 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | ||||| || || ||||| |||||| | || || || Sbjct 774969 GATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCAG 774910 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||||||| | |||||| | |||| || ||||||||| Sbjct 774909 CAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAAC 774850 Query 106440 ATACAAAAAGAATCTACACTACAT 106463 || || |||||||| || || ||| Sbjct 774849 ATCCAGAAAGAATCCACTCTTCAT 774826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || || || || || | ||||| ||||| || ||| | ||| ||| | | Sbjct 775258 AATGCAGATCTTCGTGAAGACTCTTACTGGGAAGACGATCACCCTTGAAGTTGAAGCAAG 775199 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 |||| || ||| | ||||| || || ||||| |||||| | || || || Sbjct 775198 CGATACTATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAAGGCATCCCACCCGACCA 775139 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | |||| ||| ||||||||| | |||||| | |||| || |||||||| Sbjct 775138 GCAACGCTTGATTTTTGCCGGCAAACAACTTGAAGATGGTCGAACTCTGTCTGATTACAA 775079 Query 106439 CATACAAAAAGAATCTACACTACAT 106463 ||| || |||||||| || || ||| Sbjct 775078 CATCCAGAAAGAATCCACTCTTCAT 775054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402122598403328